View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_21 (Length: 502)
Name: NF13040_low_21
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 488
Target Start/End: Original strand, 34594441 - 34594919
Alignment:
| Q |
10 |
catcatcaccttcaaataaacaaatcaaaacagcagcttttttaggactaaatttttctggattttgaatcatggtagcagattcaggaaaacccaattg |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34594441 |
catcatcgccttcaaataaacaaatcaaaacagcagcttttttaggactaaatttttctggattttgaatcatggtagcagattcaggaaaacccaattg |
34594540 |
T |
|
| Q |
110 |
agaaacaactttgccaccactctcttcttcaatgctctgttccaaaacatcttcaggaaaaggtggtggtggcttgtagagacgaagatgttgtgccaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34594541 |
agaaacaactttgccaccactctcttcttcaatgctctgttccaaaacatcttcaggaaaaggtggtggtggcttgtagagacgaagatgttgtgccaac |
34594640 |
T |
|
| Q |
210 |
gcaagaagtctctgagatccactagtggtaacgttggaagaagaatccatgactttggtgacagatactgttcttggtagtaacgttgttgttattgttc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34594641 |
gcaagaagtctctgagatccactagtggtaacgttggaagaagaatccatgactttggtgacagatactgttcttggtagtaacgatgttgttattgttc |
34594740 |
T |
|
| Q |
310 |
ttagaattgaattcatgtgtgtgattatgtttgaaattaatataacgcattaacacccacctaccctatagtatcaaattgttattgttttgctaaacta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34594741 |
ttagaattgaattcatgtgtgtgattatgtttgaaattaatataacgcattaaaacccacctaccctatagtatcaaattgttattgttttgctaaacta |
34594840 |
T |
|
| Q |
410 |
gtagtttaatgtttgaaggtctgatccttgtcggaatgaaatctttatcttagattacatggaaatttgatatatttga |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
34594841 |
gtagtttaatgtttgaaggtctgatccttgtcggaatgaaatctttgtcatatattacatggaaatttgatatatttga |
34594919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 47435427 - 47435385
Alignment:
| Q |
90 |
gattcaggaaaacccaattgagaaacaactttgccaccactct |
132 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47435427 |
gattctggaaaatccaattgagaaacaactttgccaccactct |
47435385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University