View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_22 (Length: 497)

Name: NF13040_low_22
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_22
NF13040_low_22
[»] chr1 (10 HSPs)
chr1 (19-492)||(47712866-47713339)
chr1 (22-471)||(47759802-47760251)
chr1 (22-477)||(47717684-47718130)
chr1 (23-471)||(47745479-47745918)
chr1 (57-104)||(6523721-6523768)
chr1 (419-471)||(47704889-47704941)
chr1 (57-141)||(47778037-47778127)
chr1 (52-143)||(6521714-6521811)
chr1 (318-359)||(47811738-47811779)
chr1 (319-359)||(6521987-6522027)
[»] chr5 (5 HSPs)
chr5 (24-96)||(28856511-28856583)
chr5 (44-143)||(28831268-28831367)
chr5 (24-99)||(28861785-28861860)
chr5 (70-143)||(28875835-28875908)
chr5 (426-471)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 47713339 - 47712866
Alignment:
Q  19 gatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713339 gatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgc 47713240  T
Q  119 gttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagt 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  47713239 gttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagt 47713140  T
Q  219 tcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaatttt 318  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713139 tcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaatttt 47713040  T
Q  319 caaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgtt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713039 caaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgtt 47712940  T
Q  419 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgctcct 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47712939 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcct 47712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 471
Target Start/End: Complemental strand, 47760251 - 47759802
Alignment:
Q  22 gtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgtt 121  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  47760251 gtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgtt 47760152  T
Q  122 actcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttct 221  Q
    ||||||||||||||||||| ||| || | ||| | |||||||||||||||||||  |||    | |||||||| |||||||||| |||||| | ||||||    
T  47760151 actcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttct 47760052  T
Q  222 tggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaa 321  Q
    ||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||| |||||||||||||||    
T  47760051 tgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaa 47759952  T
Q  322 accatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttata 421  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||   |||||| ||||| ||||||| ||  ||| |||    
T  47759951 accatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaata 47759852  T
Q  422 acaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 471  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47759851 acaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa 47759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 477
Target Start/End: Complemental strand, 47718130 - 47717684
Alignment:
Q  22 gtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgtt 121  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||    
T  47718130 gtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgtt 47718031  T
Q  122 actcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttct 221  Q
    ||||||||||||||||||| ||| || | |||   |||||    | ||  | ||  | |  ||| |||| |||||||||||||| |||||||| ||||||    
T  47718030 actcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttct 47717931  T
Q  222 tggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaa 321  Q
    ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| | | |||||||||         |||||||||| ||    
T  47717930 tgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaattttgaa 47717840  T
Q  322 accatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttata 421  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||||||||| ||||| | | |||    
T  47717839 accacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaata 47717740  T
Q  422 acaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat 477  Q
    ||||| ||||  ||| |||| ||||||||||||| ||||||||| ||||| |||||    
T  47717739 acaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat 47717684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 471
Target Start/End: Complemental strand, 47745918 - 47745479
Alignment:
Q  23 tttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgtta 122  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||||||||    
T  47745918 tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgtta 47745819  T
Q  123 ctcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttctt 222  Q
    ||||||||||||||||||||||||| | ||    |||      | ||||| ||  |||   |  ||||||||||| |||| || |||||||| |||||||    
T  47745818 ctcaaaccgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagttctt 47745719  T
Q  223 ggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaa 322  Q
    || ||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||| | | ||||||||||         ||||||||| |||    
T  47745718 gggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgctaccgctaatgcaact---------ttgaattttgaaa 47745628  T
Q  323 ccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataa 422  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||  |||||| ||||||| ||||| ||  | ||||||    
T  47745627 ccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataa 47745528  T
Q  423 caagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 471  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  47745527 caagattggtggtagagttctcaaactaagttgtaatattagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 6523721 - 6523768
Alignment:
Q  57 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 104  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6523721 tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 6523768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  419 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 471  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 47778037 - 47778127
Alignment:
Q  57 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgagg------actacatgttgcgttactcaaaccgatcaatattt 141  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||| ||||      | | |||||||||||||||| |||| |||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatattt 47778127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 6521714 - 6521811
Alignment:
Q  52 gttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggta------tgaggactacatgttgcgttactcaaaccgatcaatatttgg 143  Q
    |||||||| ||| ||| ||||| ||||| ||||||||||||||| |||||      ||| || | ||||||||||||||||||||| |||||||||||    
T  6521714 gttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttgg 6521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  318 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 359  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  319 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 359  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 28856583 - 28856511
Alignment:
Q  24 ttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggt 96  Q
    |||||||||| |||| ||  |||||||||||||||| ||| ||  |||||||||| |||||||||||||||||    
T  28856583 ttgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt 28856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 28831367 - 28831268
Alignment:
Q  44 attcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg 143  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||  ||||  |||  | | ||||||||||||||| || || || ||||||||    
T  28831367 attcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaattatttggactgacaattgcatgttgcgttactccaatcggtccatatttgg 28831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 28861860 - 28861785
Alignment:
Q  24 ttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttgg 99  Q
    |||||||||| |||| ||  |||||||||||||||| ||| ||   ||||| ||||||||||||||||||||||||    
T  28861860 ttgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg 28861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 28875908 - 28875835
Alignment:
Q  70 tgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg 143  Q
    |||||| ||| |||||||||||||||||||  |||  ||| |||| |||||||||||| ||| |||||||||||    
T  28875908 tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg 28875835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  426 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 471  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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