View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_23 (Length: 495)
Name: NF13040_low_23
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 24 - 482
Target Start/End: Original strand, 15889358 - 15889810
Alignment:
| Q |
24 |
cattggaatgtgaatgctacattcaactattgtctcacctcccttccaagctactttattagatgattgcaagctatgtggcactgacaccttggattga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15889358 |
cattggaatgtgaatgctacattcaactattgtctcacctcccttccaagctactttattagatgattgcaagctatgtggcaccgacaccttggattga |
15889457 |
T |
|
| Q |
124 |
agatgtgtttggtggtgtctaacatgtgtcagagtctggcaccaacatgacactgacacatgttacatttaatcacttgtattttttaaactattaccaa |
223 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15889458 |
agatgtgttttgtg---tctaacatgtgtcagagtctgacaccaacatgacactgacacatgttacatttaatcgcttgtattttttaaactattaccaa |
15889554 |
T |
|
| Q |
224 |
aacctacgtgtcaatatgagtgtcgtgtctatatcagtgctttatagattgcaatttggtaaaaccatgaattcttattaaggaacaaaatcactcacat |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15889555 |
aacctatgtgtcaatatgagtgtcgtgtctatatcagtgc----tagattgcaatttggtaaaatcatgaattcttattaaggaacaaaatcactcacac |
15889650 |
T |
|
| Q |
324 |
ttacaattttctt-agggctaaacagttaaaatgtattatactaaactactagtactaactttcatccaataaaatccaagaattgattaaaatttaaca |
422 |
Q |
| |
|
|| ||||| |||| || || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
15889651 |
tttcaattctcttaagtgccaaacaattgaaatgtattatactaaactactagtactaactttcatccaataaaatcagaaaattgattaaaatttaaca |
15889750 |
T |
|
| Q |
423 |
aataatcaatacaagtatattcaaattgatgaaactctagaagaacctggtttgtttctt |
482 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15889751 |
aataatcaatacaagtatgttcaaattgatgaaactctagaagaacctgctttgtttctt |
15889810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University