View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_25 (Length: 478)
Name: NF13040_low_25
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 25803112 - 25802664
Alignment:
| Q |
19 |
acttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggc |
118 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803112 |
acttcgaacaacgttgcctgaagctaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggc |
25803013 |
T |
|
| Q |
119 |
aatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtacc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803012 |
aatagacaaggcaataaaatcccaacaagtagtcagagaaattactgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtacc |
25802913 |
T |
|
| Q |
219 |
gtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25802912 |
gtggttgttgaggtaaaaggagcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
25802813 |
T |
|
| Q |
319 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
25802812 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatactgatattgtagtgatagctggaggtcatctatg |
25802713 |
T |
|
| Q |
419 |
aatcaaaaaatttatattgaatgaataaatttgcaattttcatctcact |
467 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25802712 |
aatcaaaaaatttatattgaatgaataaaattgcaattttcatctcact |
25802664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 23915053 - 23914625
Alignment:
| Q |
19 |
acttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggc |
118 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
23915053 |
acttcgaacaacgctgtctcaaactaatagaaggttaccctccaattactttgatcaaagattatcttaccttttgcaggtcatttttaaagattgcggc |
23914954 |
T |
|
| Q |
119 |
aatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtacc |
218 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| | ||||||| ||| ||| | ||||||| | || |
|
|
| T |
23914953 |
aatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgctaatgattataatagt |
23914854 |
T |
|
| Q |
219 |
gtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
318 |
Q |
| |
|
||||||| | | |||||| ||||||| ||| || ||||| | |||| |||| | ||| ||||||| |||||||| | | | ||| ||| ||||| |
|
|
| T |
23914853 |
gtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaaggtgtgaagatagct |
23914754 |
T |
|
| Q |
319 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatg |
418 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||| ||||||| | ||| ||||||| |
|
|
| T |
23914753 |
tagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagccgcaggccatctata |
23914654 |
T |
|
| Q |
419 |
aatcaaaaaatttatattgaatgaataaa |
447 |
Q |
| |
|
||| || |||||||||| ||||||||| |
|
|
| T |
23914653 |
aataaattaatttatatttcatgaataaa |
23914625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 23922690 - 23922262
Alignment:
| Q |
19 |
acttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggc |
118 |
Q |
| |
|
|||| ||||| |||||| ||||||| |||||| ||||||| |||| |||||||| ||||||||||| |||||| ||||||||||||||||| || ||| |
|
|
| T |
23922690 |
actttgaacaacgttgtttgaaacttatagaagcttaccccaaaattactttgattgaagattatcttacctttgtcaggtcatttttaaagaatgcggc |
23922591 |
T |
|
| Q |
119 |
aatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtacc |
218 |
Q |
| |
|
|||| | |||||| |||||||||||||| ||| | |||||||| ||||||||||||||||| | || |||| ||| ||| |||||||||| | || |
|
|
| T |
23922590 |
aataaagaaggcagtaaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatgtgttgatgattataatagt |
23922491 |
T |
|
| Q |
219 |
gtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
318 |
Q |
| |
|
||||||| | | |||||| ||||||| ||| || ||||| |||| |||| | ||||||||||| |||||||| | | | ||| ||| ||||| |
|
|
| T |
23922490 |
gtggttggtcaattaaaagttgcattgattgaagaaccggacactatagacttggatatcaaatatgctagtgatgcacttggtaggtgtgaagatagct |
23922391 |
T |
|
| Q |
319 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatg |
418 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||| ||||||| ||||| ||||||| |
|
|
| T |
23922390 |
tagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagccggaggccatctata |
23922291 |
T |
|
| Q |
419 |
aatcaaaaaatttatattgaatgaataaa |
447 |
Q |
| |
|
||| || ||||||||||| ||||||||| |
|
|
| T |
23922290 |
aataaataaatttatatttcatgaataaa |
23922262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 24435898 - 24435842
Alignment:
| Q |
305 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacact |
361 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
24435898 |
gtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacact |
24435842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 24436127 - 24436021
Alignment:
| Q |
76 |
aagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatcc |
175 |
Q |
| |
|
||||||||||||| |||| || | |||||||| ||||||||||||||| || |||| |||| ||||||| ||||| |||||| | |||| ||||| |
|
|
| T |
24436127 |
aagattatctaactttttcaagattatttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatcc |
24436028 |
T |
|
| Q |
176 |
ttcttct |
182 |
Q |
| |
|
||||||| |
|
|
| T |
24436027 |
ttcttct |
24436021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 23995320 - 23995388
Alignment:
| Q |
54 |
taccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaata |
122 |
Q |
| |
|
||||||||||| |||| || |||||||||||| || |||| ||| | || | ||||||||||||||||| |
|
|
| T |
23995320 |
taccctcaaattacttcgaccgaagattatcttacattttccagattatatctaaagattgtggcaata |
23995388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 35074766 - 35074353
Alignment:
| Q |
19 |
acttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggc |
118 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35074766 |
actttgaacaacgttgtctcaaacttatagaagcttaccctcaaattactttgatcgaagattatctaactttttgcaggtcatttttaaagattgtggc |
35074667 |
T |
|
| Q |
119 |
aatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtacc |
218 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||| | ||||||| ||| ||| |||||||||| ||| |
|
|
| T |
35074666 |
aatagagaaggcagtaaaatcccaacaacaagttaaagagattatgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacg |
35074567 |
T |
|
| Q |
219 |
gtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
318 |
Q |
| |
|
|||||| | |||||| ||||||||||| ||||||||||||| ||||| | |||||||||| |||||| | |||||| | |||||||| |||||||||| |
|
|
| T |
35074566 |
gtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagct |
35074467 |
T |
|
| Q |
319 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatg |
418 |
Q |
| |
|
| ||| ||||||||||||| |||| ||||||||||| | ||||||||||||| ||| |||| || | |||||||||||||||| ||||| ||||||| |
|
|
| T |
35074466 |
tggctgatgaaaagattgtcaatacttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctata |
35074367 |
T |
|
| Q |
419 |
aatcaaaaaattta |
432 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
35074366 |
aattaataaattta |
35074353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 21 - 417
Target Start/End: Complemental strand, 35079733 - 35079337
Alignment:
| Q |
21 |
ttcgaacagcgttgtctgaaactaatagaatcttaccctcaaatcactttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaa |
120 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||| |||| || |||||| ||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
35079733 |
ttcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttttaaagactgtggcaa |
35079634 |
T |
|
| Q |
121 |
tagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatccttcttctgatcccatcagagagtgttttgatgattacagtaccgt |
220 |
Q |
| |
|
|| | |||||||||||||||||||| ||||| ||||||| ||||||||||||||||| | || |||| ||| || ||||||||||| ||| || |
|
|
| T |
35079633 |
taaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatgcggtgatgattacaatacggt |
35079534 |
T |
|
| Q |
221 |
ggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagctta |
320 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||| ||||| | |||||||||||||||||| | |||||| | |||||||| ||||||||||| |
|
|
| T |
35079533 |
ggttagcgaggtacaaggtgcattgcgcgaggatccggaaatgataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttg |
35079434 |
T |
|
| Q |
321 |
gctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctat |
417 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| || |||||||||||||| ||||||| | ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
35079433 |
gctaacgaaaagattgttaatacttcttccattgctgcattgaatcatgagatgatgttgtatacagatattgtagtcatagccggaggccatctat |
35079337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 13436196 - 13436259
Alignment:
| Q |
313 |
gtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
376 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
13436196 |
gtagcttagttaatgaaaagatttttaatatttcttccatttctacaatgaatagtgagatgga |
13436259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 13435966 - 13436071
Alignment:
| Q |
77 |
agattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaattaccgaaaaatatcct |
176 |
Q |
| |
|
||||||||| ||||||| || | |||||||| ||||||||||||||| || |||| |||| |||||| ||||| |||||| || |||||||||| |
|
|
| T |
13435966 |
agattatcttaccttttcaagattatttttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatccc |
13436065 |
T |
|
| Q |
177 |
tcttct |
182 |
Q |
| |
|
|||||| |
|
|
| T |
13436066 |
tcttct |
13436071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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