View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_26 (Length: 472)
Name: NF13040_low_26
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_26 |
 | |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
| [»] scaffold0101 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 6 - 459
Target Start/End: Complemental strand, 31341477 - 31341024
Alignment:
| Q |
6 |
agcaccacagaggacaataagaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
105 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31341477 |
agcaccaaacaggaaaataagaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
31341378 |
T |
|
| Q |
106 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31341377 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggaatagtagtgtatctccaaacgttgtagatatccaaactttagccctctgca |
31341278 |
T |
|
| Q |
206 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31341277 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgac |
31341178 |
T |
|
| Q |
306 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgttcgtaatattaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31341177 |
acattacaatgccaaaggacacctattttccagaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaagggtccgcatgttcgtaatattaag |
31341078 |
T |
|
| Q |
406 |
gttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31341077 |
gttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
31341024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 7841 - 8227
Alignment:
| Q |
6 |
agcaccacagaggacaataagaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
105 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7841 |
agcaccaaacaggaaaataagagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
7940 |
T |
|
| Q |
106 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7941 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgca |
8040 |
T |
|
| Q |
206 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8041 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgac |
8140 |
T |
|
| Q |
306 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8141 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
8227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 15363070 - 15363456
Alignment:
| Q |
6 |
agcaccacagaggacaataagaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
105 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363070 |
agcaccaaacaggaaaataagagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
15363169 |
T |
|
| Q |
106 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363170 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgca |
15363269 |
T |
|
| Q |
206 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15363270 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgac |
15363369 |
T |
|
| Q |
306 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363370 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
15363456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Complemental strand, 7406499 - 7406113
Alignment:
| Q |
6 |
agcaccacagaggacaataagaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
105 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406499 |
agcaccaaacaggaaaataagagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaag |
7406400 |
T |
|
| Q |
106 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406399 |
aacaaagcccaaaacttaaaaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgca |
7406300 |
T |
|
| Q |
206 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7406299 |
aaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgac |
7406200 |
T |
|
| Q |
306 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406199 |
acattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
7406113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 280 - 459
Target Start/End: Original strand, 1655893 - 1656072
Alignment:
| Q |
280 |
ttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatcca |
379 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655893 |
ttagtttaataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatcca |
1655992 |
T |
|
| Q |
380 |
agggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655993 |
agggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
1656072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 77 - 459
Target Start/End: Original strand, 17303497 - 17303877
Alignment:
| Q |
77 |
tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaag-aacgactttgatatatctggactagtagtgtatctccaaacg |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17303497 |
tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaaggaacgactttgatatatctggactagt---gtatctccaaacg |
17303593 |
T |
|
| Q |
176 |
ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctccta |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303594 |
ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctccta |
17303693 |
T |
|
| Q |
276 |
ttatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17303694 |
atatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaataagtacattcaaggcaagaaaatgaaccgtaaaa |
17303793 |
T |
|
| Q |
376 |
tccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303794 |
tccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatccgctgtaacaagagctga |
17303877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 243 - 457
Target Start/End: Original strand, 17253300 - 17253512
Alignment:
| Q |
243 |
gacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaaca |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||| || ||| ||||||||| || ||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
17253300 |
gacagaatcataaatattgccgaagctctcctaatatctagattcatatttctaaacattggcacatcacaatgtcaaaggacacctatt--ccagaaca |
17253397 |
T |
|
| Q |
343 |
agtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatcc |
442 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
17253398 |
agtacattcaaggcaagaaaatgaccagtgaaatccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatcacagtacagcatctcc |
17253497 |
T |
|
| Q |
443 |
gctgtaacaagagct |
457 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17253498 |
cctgtaacacgagct |
17253512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 166 - 389
Target Start/End: Original strand, 17242255 - 17242471
Alignment:
| Q |
166 |
tctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaa--agatggacagaatcataaatattgtt |
263 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
17242255 |
tctccaaacattgtagatattcaaactttagccctctgcaaaacagaggtgtatatcttgattatccaagaaagagatggacagtatcataaatattgcc |
17242354 |
T |
|
| Q |
264 |
gaagctctcctattatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaa |
363 |
Q |
| |
|
|||||||| || ||| ||| || ||||||||| ||| || ||||| || ||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
17242355 |
aaagctctcataatatctagattcataattctagacattgccacatcac-------aaggacaccta--tacatgaacaagtacattcaaggcaagaaaa |
17242445 |
T |
|
| Q |
364 |
tgaaccgtaaaatccaagggtctgca |
389 |
Q |
| |
|
||| | || ||||||||||||||||| |
|
|
| T |
17242446 |
tgaccggtgaaatccaagggtctgca |
17242471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 17242148 - 17242227
Alignment:
| Q |
58 |
attgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaagaacgact |
140 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
17242148 |
attgaaaagaaaaatagattcacaatccaatct---tcatgtcttaaaaacaaagcaataatcttaaaaagtaaagaacgact |
17242227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 17253170 - 17253244
Alignment:
| Q |
46 |
atcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaactta |
123 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||| |||||| |||| |
|
|
| T |
17253170 |
atcaatagaaatattgaaaataaaaatagattcacaatccaatct---gcatgtcataagaacaaatcccaaatctta |
17253244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 127 - 459
Target Start/End: Complemental strand, 4684861 - 4684529
Alignment:
| Q |
127 |
agtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684861 |
agtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga |
4684762 |
T |
|
| Q |
227 |
ttatccaagaaagatggacagaatcataaatattgttgaagctctcctattatttagtttaataattctaaacaatgacacattacaatgccaaaggaca |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4684761 |
ttatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattagaatgccaaaggaca |
4684662 |
T |
|
| Q |
327 |
cctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684661 |
cctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgttcgtaatattaaggttagctgcagctttaaaatc |
4684562 |
T |
|
| Q |
427 |
acagtatatcatatccgctgtaacaagagctga |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4684561 |
acagtatatcatatccgctgtaacaagagctga |
4684529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 28125 - 28189
Alignment:
| Q |
387 |
gcatgttcgtaatattaaggttagctgcagctttaaaatcacagtatatcatatccgctgtaaca |
451 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||| ||||| ||| |||||||| |
|
|
| T |
28125 |
gcatgttcgtaatattaatgttagctgcagcttaaaaatcaaggtacatcatgtcccctgtaaca |
28189 |
T |
|
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