View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_27 (Length: 468)
Name: NF13040_low_27
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 47 - 457
Target Start/End: Complemental strand, 41446926 - 41446516
Alignment:
| Q |
47 |
gagaaaaatataataacatagtatttgacttttatttatccatttacatctactattacaaaggctaaaacaaaggctaaagttattgtactcaactttt |
146 |
Q |
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| T |
41446926 |
gagaaaaatataataacatagtatttgacttttatttatccatttacatctactattacaaaggctaaatcaaaggctaaagttattgtactcaactttt |
41446827 |
T |
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| Q |
147 |
attacctcgacaacatgttgtagatgtgtccaatgagagtgtaaggtttgttaaaataannnnnnnggatacttgttttagtttgatcaacacgtgtctt |
246 |
Q |
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| T |
41446826 |
attacctcaacaacatgttgtagatgtgtccaatgagagtgtaaggtttgttgaaataatttttttggatacttgttttagtttgatcaacacgtgtcgt |
41446727 |
T |
|
| Q |
247 |
acgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttttaataca |
346 |
Q |
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| T |
41446726 |
acgtctgtcatatatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttttaataca |
41446627 |
T |
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| Q |
347 |
agtcgtacatatatcatacaactatcggacacttatccttaaggtgtctgtgcttcatagataaactatgaatttctttgatccaaccgtttattatcgt |
446 |
Q |
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| T |
41446626 |
agtcgtacatatatcatacaactatcggacacttatccttaaggtgtctgtgcttcatagataaacaatgaatttctttgatccaaccatttattattgt |
41446527 |
T |
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| Q |
447 |
cataacatatt |
457 |
Q |
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| T |
41446526 |
tataacatatt |
41446516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 41455370 - 41455294
Alignment:
| Q |
381 |
atccttaaggtgtctgtgcttcatagataaactatgaatttctttgatccaaccgtttattatcgtcataacatatt |
457 |
Q |
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| T |
41455370 |
atcctttaggtgtctgtgcttcatagataaacaatgaatttcattgatccaaccatttattattgtcataacgtatt |
41455294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 41455532 - 41455418
Alignment:
| Q |
240 |
gtgtcttacgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaattttgttggaacacttgactcaaatttt |
339 |
Q |
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| T |
41455532 |
gtgtcgtacgtgtgtcatgtatgtttctgacac--tgattgaagga--gtgtgaaaaggaagaaaaaacaaattttgttaggacgcttgtctcagatttc |
41455437 |
T |
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| Q |
340 |
taatacaagtcgtacatat |
358 |
Q |
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| T |
41455436 |
taacacatgtcgtacatat |
41455418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 41457007 - 41456923
Alignment:
| Q |
158 |
aacatgttgtagatgtgtccaatgagagtgtaaggtttgttaaaataannnnnnnggatacttgttttagtttgatcaacacgtg |
242 |
Q |
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| T |
41457007 |
aacatgttgtagatgtgtccaaggcgagtgtaaggtttgtaaagataagtctttcggatacttgtcttagtttgaccgacacgtg |
41456923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41446999 - 41446968
Alignment:
| Q |
1 |
tgcatgctctctggttcttgatgactatgtag |
32 |
Q |
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| T |
41446999 |
tgcatgctctctggttcttgatgactatgtag |
41446968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 16419484 - 16419554
Alignment:
| Q |
381 |
atccttaaggtgtctgtgcttcatagataaactatgaatttctttgatccaaccgtttattatcgtcataa |
451 |
Q |
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| T |
16419484 |
atcctttaggtgtctgtgcttcatagataaacaatgaatttcattgatccaactgtttattattgtcataa |
16419554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 358
Target Start/End: Original strand, 16419303 - 16419437
Alignment:
| Q |
213 |
ggatacttgttttagtttgatcaacacgtgtcttacgtgtgtcatacatgtttcagacacactgattgaaggaaagtgtgaaaacgaagaaaaaacaaat |
312 |
Q |
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| T |
16419303 |
ggatacttgtcttagtttgaccgacacgtgtcgtacgtgtgtcatgcat---------acattgattgaagga--gtgcgaaaaggaagaaaaaacaaat |
16419391 |
T |
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| Q |
313 |
tttgttggaacacttgactcaaatttttaatacaagtcgtacatat |
358 |
Q |
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| T |
16419392 |
ttcgttgggacacttgtctcaaatttctaacacatgtcgtacatat |
16419437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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