View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_29 (Length: 444)
Name: NF13040_low_29
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 23381266 - 23381073
Alignment:
| Q |
247 |
acaacccaattgcacgtgtgatggattctggtaatcttgtggtacaaaatcgaaat-------------aatatttacttaacaacaacatagatttagg |
333 |
Q |
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| T |
23381266 |
acaacccaattgcacgtgtgatggattctggtaatcttgtggtacaaaatcaaaatgattctaatgcggaatatttacttaacaacaacatagatttagg |
23381167 |
T |
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| Q |
334 |
tttgttttcaacgagaaacaagtttactttatgagtgaaatcctc--tatatcggtaatatccatttaccgacttacccctttaggccatggac |
425 |
Q |
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| T |
23381166 |
tttcttttcaaggagaaacaagtttactttataagtgaaatcctcgatatatcggtaatatccatttaccgactcacccctttaggccatggac |
23381073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 247 - 417
Target Start/End: Original strand, 23347956 - 23348141
Alignment:
| Q |
247 |
acaacccaattgcacgtgtgatggattctggtaatcttgtggtacaaaatcgaaat-------------aatatttacttaacaacaacatagatttagg |
333 |
Q |
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| T |
23347956 |
acaacccaattgcacatgtgatggattccggtaatcttgtggtacaaaatcaaaatgattctaatgcggaatatttacttaacaacaacatagatttagg |
23348055 |
T |
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| Q |
334 |
tttgttttcaacgagaaacaagtttactttatgagtgaaatcctc--tatatcggtaatatccatttaccgacttacccctttagg |
417 |
Q |
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| T |
23348056 |
ttttttttcaacaagaaacaagtttactttataagtgaaatcctcgatatatcggtaatatccatttaccgactcacccctttagg |
23348141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 23381820 - 23381698
Alignment:
| Q |
107 |
attcaaacatgtatttctgaatttattattttattacacagtcattccatttctgattgcatttgtc--atttgatatgttaccaaaagtagcaatttaa |
204 |
Q |
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| T |
23381820 |
attcaaacatatatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcatatttgatatgttaccaaaagtagcaatttaa |
23381721 |
T |
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| Q |
205 |
aaacacgttgctttgaacataca |
227 |
Q |
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| T |
23381720 |
aaacacgttgctttgaatataca |
23381698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 23347397 - 23347517
Alignment:
| Q |
107 |
attcaaacatgtatttctgaatttattattttattacacagtcattccatttctgattgcatttgtcatttgatatgttaccaaaagtagcaatttaaaa |
206 |
Q |
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| T |
23347397 |
attcaaacatatatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcatttgatatattgccaaaagtagaaatttaaaa |
23347496 |
T |
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| Q |
207 |
acacgttgctttgaacataca |
227 |
Q |
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| T |
23347497 |
acacgttgctttgaatataca |
23347517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 23345094 - 23345142
Alignment:
| Q |
16 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacac |
64 |
Q |
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| T |
23345094 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacac |
23345142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 23381908 - 23381860
Alignment:
| Q |
16 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacac |
64 |
Q |
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| T |
23381908 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacac |
23381860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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