View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_3 (Length: 949)
Name: NF13040_low_3
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 751; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 3 - 933
Target Start/End: Original strand, 8944200 - 8945126
Alignment:
| Q |
3 |
cagatgggagtggatcatgaactggagacaacctttgttctcgtgaaagggatcactattagtgcttgagtcagaggctgtcattgcagggatcactatt |
102 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8944200 |
cagatgggagtggagcatgaactggagacaacctttgttctcgtgaaagggatcactattattgcttgagtcagaggctgtcattgcagggatcactatt |
8944299 |
T |
|
| Q |
103 |
agtgcagattttttggacaaattgatttggagacacgactccgtggctaggtacattgtaaagtcagcatatatactttgtcaaagaaaaaggtgcatca |
202 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944300 |
agtgcagatttttcggacaaattgatttggagacacgactccgtggctaggtacactgtaaagtcagcatatatactttgtcaaagaaaaaggtgcatca |
8944399 |
T |
|
| Q |
203 |
tgctttgtatataatatttgatcagctcagcagtactaatgaataaaccatcaaattggcttatgattttgtgaagttcttttaaataggtatgtcaaat |
302 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8944400 |
tgctttgtatataatgtttgatcagctcagcagtg---acgagtaaaccatcaaattggcctatgattttgtgaagttcttttaaataggtatgtcaaat |
8944496 |
T |
|
| Q |
303 |
tatgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagttgcttaacatcgttttactgggacgaaatt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| ||||||||| |
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| T |
8944497 |
tatgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagtttcttagcatctttttcctgagacgaaatt |
8944596 |
T |
|
| Q |
403 |
gataataagtagtaaaatataaggatgtaaacgaaacgtgataacatgaaagtttgacagaaatatagatatgagtaatgtttcaccgagtaagaggcgt |
502 |
Q |
| |
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|||| ||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||| |
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| T |
8944597 |
gatactaagtggttaaatataaggatgtaagcgaaacgtgttaacgataaagtttgacagaaagatagatatgatcaatgtttcaccgagtaagagacgt |
8944696 |
T |
|
| Q |
503 |
atttgaaatattcataatctcatggaccatttgaaagcgcaataaattacatggataaatttggtggtttcctttgattatatctaattgagtttatgtt |
602 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
8944697 |
atttaaaatattcataatctcatggaccatttgaaagcgcaataaattacatggatacatttggtggtttcctttcattgtatctaattgagtttatgtt |
8944796 |
T |
|
| Q |
603 |
tttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctc |
702 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8944797 |
tttgacgatgcagaaatgaagagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctc |
8944896 |
T |
|
| Q |
703 |
tatttttaatctgtgattcaacttttttcattagtggtaaactatattcatctctaaattaacttggttagactcattatcactcatcacattatttcaa |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8944897 |
tatttttaatctgtgattcaacttttttcattagtggtaaacgatattcatctctaaattaactttgttagactcattatcactcatcacattatttcaa |
8944996 |
T |
|
| Q |
803 |
tatatgaaaaatggatgcatatccttggtttattgcannnnnnntctgatacacataatttaagtaccaaaatgatttctagtattcatcagaaaacaca |
902 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944997 |
tatatgaaaaatggatgcatatccttggtttactgca-cccccctctgatacacataatttaagtaccaaaatgatttctagtattcatcagaaaacaca |
8945095 |
T |
|
| Q |
903 |
aataattcctataaaatatagcccaaaatca |
933 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
8945096 |
aataattcctataaaatatagcccaaaatca |
8945126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 749
Target Start/End: Complemental strand, 8964430 - 8964272
Alignment:
| Q |
591 |
tgagtttatgtttttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaa |
690 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | | | |||| | |||||| ||| | ||||||||||||||| |||| ||||||||||| |
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| T |
8964430 |
tgagtttatgttattgaagatgcagagatgaagagcttgaatggaatgtatttgcaaagaaaatatggttttctttcatctacagtttcatcaatttcat |
8964331 |
T |
|
| Q |
691 |
tttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
749 |
Q |
| |
|
|| | | |||||||||||||| ||| ||||||||||| ||||||||||||| |||| |
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|
| T |
8964330 |
ttgtactttctctatttttaatttgtaattcaacttttccaattagtggtaaacgatat |
8964272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 43564510 - 43564406
Alignment:
| Q |
75 |
agaggctgtcattgcagggatcactattagtgcagattttttggacaaattgatttggagacacgactccgtggctaggtacattgtaaagtcagcatat |
174 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||||||| |||||||| | ||| |||||| |||||||||||| |||||| |||||||| |||||| |
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|
| T |
43564510 |
agaggctgttattgcagggatcactgtgagtgcagatttttcggacaaatgggtttagagacatgactccgtggctgggtacacggtaaagtctgcatat |
43564411 |
T |
|
| Q |
175 |
atact |
179 |
Q |
| |
|
||||| |
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|
| T |
43564410 |
atact |
43564406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 663 - 749
Target Start/End: Original strand, 21685541 - 21685627
Alignment:
| Q |
663 |
ctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
749 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||| | || ||||| | | ||||||||||||| ||| ||||||||| |||| |
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| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtctattttcttaatatataattcaacttttttaattggtggtaaacgatat |
21685627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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