View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_30 (Length: 443)
Name: NF13040_low_30
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 47373430 - 47373022
Alignment:
| Q |
17 |
gaaaccacaacagccacctatcttccccctcaacagaagtgttcctcattggttctgaatccaaagagtcttgaattgtgcacagaaaatcttggcaacg |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373430 |
gaaaccacaacagccacctatcttccccctcagcagaagtgttcctctttggttctgagtccaaagagtcttgaattgtgcacagaaaatcttggcaacg |
47373331 |
T |
|
| Q |
117 |
agagtggtactgacactgtagaaaacgacatattgttgtcttcaatgggaacaatggagcaaagacaaccttgttctcaagttttagcagctactaagaa |
216 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373330 |
agagtggtactgacattgtagaaaacgacttattgttgtcttcaatgggaacaatggagcaaagacaaccttgttctcaagttttagcagctactaagaa |
47373231 |
T |
|
| Q |
217 |
agtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatctcttcatgttagaacccaccgtggagatggaaggttggtgattgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373230 |
agtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatcttttcatgttagaacccaccgtggagatggaaggttggtgattgaa |
47373131 |
T |
|
| Q |
317 |
gtcactaaggtcccaccaagtacttcttgctttcaagctgatagaagccatggccgtcttcgtctctattttttgacaaatgagactacaagttttgacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373130 |
gtcactaaggtcccaccaagtacttcttgctttcaagctgatagaagccatggctgtcttcgtctctattttttgacaaatgagactacaagttttgacc |
47373031 |
T |
|
| Q |
417 |
cggaagaag |
425 |
Q |
| |
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||||||||| |
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| T |
47373030 |
cggaagaag |
47373022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 47385499 - 47385906
Alignment:
| Q |
17 |
gaaaccacaacagccacctatcttccccctcaacagaagtgttcctcattggttctgaatccaaagagtcttgaattgtgcacagaaaatcttggcaacg |
116 |
Q |
| |
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|||||||||||| |||||||| | | ||||||||||| ||||||| |||| | ||| ||||||||| |||||||| || || || |||||||| || | |
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| T |
47385499 |
gaaaccacaacaaccacctatgtgcatcctcaacagaaacgttcctctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatg |
47385598 |
T |
|
| Q |
117 |
agagtggtactgacactgtagaaaacgacatattgttgtcttcaatgggaacaatggag---caaagacaaccttgttctcaagttttagcagctactaa |
213 |
Q |
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| ||||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||| |||||| |||||||| || ||| ||| ||||||||| |
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| T |
47385599 |
aaagtggcactgacattgtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaa |
47385698 |
T |
|
| Q |
214 |
gaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatctcttcatgttagaacccaccgtggagatggaaggttggtgatt |
313 |
Q |
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|||| |||| || ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||| |||||| ||||| || ||| |
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| T |
47385699 |
gaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaatt |
47385798 |
T |
|
| Q |
314 |
gaagtcactaaggtcccaccaagtacttcttgctttcaagctgatagaagccatggccgtcttcgtctctattttttgacaaatgagactacaagttttg |
413 |
Q |
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|||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47385799 |
gaagtcacaaaggtcccaccaagtacatcatgttttcaagctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttg |
47385898 |
T |
|
| Q |
414 |
acccggaa |
421 |
Q |
| |
|
|||||||| |
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|
| T |
47385899 |
acccggaa |
47385906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 20976602 - 20976673
Alignment:
| Q |
290 |
cgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaagctgataga |
361 |
Q |
| |
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|||| |||||||||||||| |||||||| | ||||||||||||||||| || || ||||||||||||||| |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgataga |
20976673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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