View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_35 (Length: 419)
Name: NF13040_low_35
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 12513591 - 12513196
Alignment:
| Q |
7 |
tccaagaatataaaccacctttaatactcttcaataaacctaacaataatacttcctaaagttttccaaccaagaattagacttgatgatctgccattta |
106 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513591 |
tccaacaatacaaaccacctttaatactcttcaataaacctaacaataatacttcctaaagttttccaaccaagaattagacttgatgatctgccattta |
12513492 |
T |
|
| Q |
107 |
taaggcaatcaaattttcatggttgagacaataggaatgacttaccatcaacttgattaacaattacaaccaaagctagtgaggtcgaagtagctgtgtt |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12513491 |
taaggcaatcaaattttcatgcttgagacaataggaatgacttaccatcaacttgattaacaattacaaccaaagctagtgaggtcgacgtagctgtgtt |
12513392 |
T |
|
| Q |
207 |
ctgcacaccacaaccaagtattttcattgtttccagaagatagtgatgatataaactcagttgcatttggctcacaatgcacgattcaccaaaatattaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513391 |
ctgcacaccacaaccaagtattttcattgtttccagaagctagtgatgatataaactcagttgcatttggctcacaatgcacgattcaccaaaatattaa |
12513292 |
T |
|
| Q |
307 |
aacctttaattgagctttaagaaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaatac |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12513291 |
aacctttaattgagctttaagaaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaatac |
12513196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 32282907 - 32282526
Alignment:
| Q |
7 |
tccaagaatataaaccacctttaatactcttcaataaacctaacaataatacttcctaaagttttccaa--ccaagaattagacttgatgatctgccatt |
104 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
32282907 |
tccaacaatacaaaccacctttaatacttttcaataaacctaacaataatacttcctaaagttttccaaaaccaagaattagacttgatgatctgcaatt |
32282808 |
T |
|
| Q |
105 |
tataaggcaatcaaattttcatggttgagacaataggaatgacttaccatcaacttgattaacaattacaaccaaagctagtgaggtcgaagtagctgtg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
|
|
| T |
32282807 |
tataaggcaatcaaattttcatggttgagacaataggaatgacttaccatcaacttgattaacaattacaactaaagcttgtgaggtcgaagtagctgcg |
32282708 |
T |
|
| Q |
205 |
ttctgcacaccacaaccaagtattttcattgtttccagaagatagtgatgatataaactcagttgcatttggctcacaa----tgcacgattcaccaaaa |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32282707 |
ttctgcacaccgcaaccaagtattttcattgtttccagaagctagtgatgatataaactcagttgcatttggctcacaatgcatgcacgattcaccaaaa |
32282608 |
T |
|
| Q |
301 |
tattaaaacctttaattgagctttaagaaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaat |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32282607 |
tattaaa--------------------aaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaat |
32282528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 15702142 - 15701761
Alignment:
| Q |
7 |
tccaagaatataaaccacctttaatactcttcaataaacctaacaataatacttcctaaagttttccaa--ccaagaattagacttgatgatctgccatt |
104 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
15702142 |
tccaacaatacaaaccacctttaatacttttcaataaacctaacaataatacttcctaaagttttccaaaaccaagaattagacttgatgatctgcaatt |
15702043 |
T |
|
| Q |
105 |
tataaggcaatcaaattttcatggttgagacaataggaatgacttaccatcaacttgattaacaattacaaccaaagctagtgaggtcgaagtagctgtg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
|
|
| T |
15702042 |
tataaggcaatcaaattttcatggttgagacaataggaatgacttaccatcaacttgattaacaattacaactaaagcttgtgaggtcgaagtagctgcg |
15701943 |
T |
|
| Q |
205 |
ttctgcacaccacaaccaagtattttcattgtttccagaagatagtgatgatataaactcagttgcatttggctcacaa----tgcacgattcaccaaaa |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15701942 |
ttctgcacaccgcaaccaagtattttcattgtttccagaagctagtgatgatataaactcagttgcatttggctcacaatgcatgcacgattcaccaaaa |
15701843 |
T |
|
| Q |
301 |
tattaaaacctttaattgagctttaagaaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaat |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15701842 |
tattaaa--------------------aaatatgaatcaaacattgtaaaatctgaaagtgagaccaatgagtcaaatatatttaaaataaacctcgaat |
15701763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 15701697 - 15701662
Alignment:
| Q |
351 |
atctgaaagtgagaccaatgagtcaaatatatttaa |
386 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15701697 |
atctgaaagtgaaaccaatgagtcaaatatatttaa |
15701662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 5569607 - 5569739
Alignment:
| Q |
214 |
ccacaaccaagtattttcattgtttccagaagatagtgatgatataaactcagttgcatttggctcacaatgcacgattcaccaaaa-tattaaaacctt |
312 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | ||||| || | |
|
|
| T |
5569607 |
ccacaaccaagtattttgattgtttccataagctagtgatgatataaactcaattgcatttcgctcacaatgctcgattcaccaaaattgttaaacccat |
5569706 |
T |
|
| Q |
313 |
taattgagctttaagaaatatgaatcaaacatt |
345 |
Q |
| |
|
| || ||||| |||||||||| |||||||||| |
|
|
| T |
5569707 |
catttaagcttgaagaaatatggatcaaacatt |
5569739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University