View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_36 (Length: 411)
Name: NF13040_low_36
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 47494914 - 47494524
Alignment:
| Q |
1 |
cgtgcttggaagttgaagagatagatgaagaatggtcaatgaatcaatcacttcaagaatttggtgtatctgaggaggagcatgttggattattgcttca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47494914 |
cgtgcttggaagttgaagagagagatgaagaatggtcaatgaatcaatcacatcaagaatttggtgtatctgaggaggagcatgttggattattgcttca |
47494815 |
T |
|
| Q |
101 |
aagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattggattctcaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47494814 |
aagagagattgcttttggattcaaaaaagatgaaaatgttgtgcttgaagactccttcaaacgtgctcgtttgaatgcaatcaattggattctcaaagtt |
47494715 |
T |
|
| Q |
201 |
agttcatccactatttttctcttttattatatgttattattctaattcagcttcattaatgaaattacaattggagaagnnnnnnnnntcttgatttggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47494714 |
agttcatccactatttttctcttttattatatgttattattctaattcagcttcattaatgaaattacaattggagaa---aaaaaaatcttgatttggc |
47494618 |
T |
|
| Q |
301 |
ttcaattttttcctgattttggattgataattatctcagaaaagagaagcattggattttcactttgaaacagcttatttgtcagtgacttact |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47494617 |
ttcaattttttcctgattttggattgataattatctcagaaaagagaagcattggattttcactttgaaacagcttatttgtcagtgacttact |
47494524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University