View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_37 (Length: 404)
Name: NF13040_low_37
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 7893320 - 7893689
Alignment:
| Q |
18 |
gtatattgtaatcaaatggatagatatatgtataactttctatagatattggtataggttgctatgtatatttttgaatagatataaatggtattgattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7893320 |
gtatattgtaatcaaatggatagatatatgtatagctttctatagatattggtataggttgctatgtatatttttgaatagatataaatggtattgattt |
7893419 |
T |
|
| Q |
118 |
tgattttaatttagattctgaaagttctagttttataattatcacatatctcaagtaatcaattatgtcatgattttatatttgtttgagttcatttcct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7893420 |
tgattttaatttagattctgaaagttctagttttataattatcacatatctcaagtaatcaattatgtcatgattttatatttgtttgagttcctttcct |
7893519 |
T |
|
| Q |
218 |
cactgctcatggatttgaagaaattttcattgatgtaacacttaagtttcataggataacatctcaagaatctatcaaccttgatgatgaagaccttgaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7893520 |
cactgctcatggatttgaagaaattttcattgatgtaacacttaagtttcataggataacatctcaagaatctgtcaaccttgatgatgaagaccttgaa |
7893619 |
T |
|
| Q |
318 |
atagtttaggatcatagatcttgaaatagttgcaaaagaaagctctcaagcacaaatgccacttattcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7893620 |
atagtttaggatcatagatcttgaaatagttgcaaaagaaagctctcaagcacaaatgccacttattcat |
7893689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 4342698 - 4342817
Alignment:
| Q |
270 |
aggataacatctcaagaatctatcaaccttgatgatgaagaccttgaaatagtttaggatcatagatcttgaaatagttgc---aaaagaaagctctcaa |
366 |
Q |
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||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || ||||||||||||| |
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| T |
4342698 |
aggataatatctaaagaatctgtcaaccttgatgatgaagaccttg-aatagtttaggaccatggatcttgaaatagttgcaagaagagaaagctctcaa |
4342796 |
T |
|
| Q |
367 |
gcacaaatgccacttattcat |
387 |
Q |
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||||||||||||||||||||| |
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| T |
4342797 |
gcacaaatgccacttattcat |
4342817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 22695350 - 22695478
Alignment:
| Q |
261 |
aagtttcataggataacatctcaagaatctatcaaccttgatgatgaagaccttgaaatagtttaggatcatagatcttgaaatagttgc---aaaagaa |
357 |
Q |
| |
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||||||| ||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||| |
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| T |
22695350 |
aagtttcgaaggataatatctaaagaatctgtcaaccttgatgatgaagaccttg-aatagtttaggaccatggatcttgaaatagttgcaagaagagaa |
22695448 |
T |
|
| Q |
358 |
agctctcaagcacaaatgccacttattcat |
387 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
22695449 |
agctctcaagcacaaatgccacttattcat |
22695478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 19644796 - 19644921
Alignment:
| Q |
261 |
aagtttcataggataacatctcaagaatctatcaaccttgatgatgaagaccttgaaatagtttaggatcatagatcttgaaatagttgcaaaa---gaa |
357 |
Q |
| |
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|||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||| | ||| |
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| T |
19644796 |
aagtttcaaaggataatatctaaagaatttatcaaccttgatga---agaccttgaa-tagtttaggaccatggatcttgaaatagttgcaagaagagaa |
19644891 |
T |
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| Q |
358 |
agctctcaagcacaaatgccacttattcat |
387 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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| T |
19644892 |
agctttcaagcacaaatgccacttattcat |
19644921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 7009762 - 7009890
Alignment:
| Q |
261 |
aagtttcataggataacatctcaagaatctatcaaccttgatgatgaagaccttgaaatagtttaggatcatagatcttgaaatagttgc---aaaagaa |
357 |
Q |
| |
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||||||| ||||||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| | || |||| |
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| T |
7009762 |
aagtttcgaaggataatatctaaataatctgtcaaccttgatgatgaagacctt-caatagtttaggaccatggatcttgaaatagttacaagaagagaa |
7009860 |
T |
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| Q |
358 |
agctctcaagcacaaatgccacttattcat |
387 |
Q |
| |
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||||||||||||||||||||||| |||||| |
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| T |
7009861 |
agctctcaagcacaaatgccactaattcat |
7009890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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