View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_38 (Length: 399)

Name: NF13040_low_38
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_38
NF13040_low_38
[»] chr2 (10 HSPs)
chr2 (10-383)||(1358409-1358776)
chr2 (41-131)||(41253717-41253807)
chr2 (41-122)||(7645466-7645547)
chr2 (42-123)||(25931579-25931660)
chr2 (41-122)||(25997370-25997451)
chr2 (41-122)||(27279493-27279574)
chr2 (41-114)||(9113981-9114056)
chr2 (29-93)||(11564994-11565059)
chr2 (41-94)||(32516215-32516268)
chr2 (41-85)||(31719187-31719231)
[»] chr8 (7 HSPs)
chr8 (44-129)||(42662690-42662776)
chr8 (41-84)||(20694510-20694553)
chr8 (44-100)||(14578512-14578568)
chr8 (42-87)||(9428069-9428114)
chr8 (67-100)||(10184630-10184663)
chr8 (62-94)||(6354732-6354764)
chr8 (42-94)||(9503623-9503675)
[»] chr4 (5 HSPs)
chr4 (26-94)||(39993123-39993192)
chr4 (41-131)||(38562170-38562260)
chr4 (74-131)||(22048856-22048913)
chr4 (42-108)||(20783696-20783762)
chr4 (56-94)||(32645575-32645613)
[»] chr3 (11 HSPs)
chr3 (41-122)||(55121227-55121308)
chr3 (42-97)||(25108984-25109039)
chr3 (67-122)||(49658341-49658396)
chr3 (41-131)||(18093784-18093874)
chr3 (41-122)||(28732464-28732546)
chr3 (42-131)||(31836418-31836507)
chr3 (41-110)||(19790788-19790857)
chr3 (29-81)||(50561051-50561104)
chr3 (42-94)||(612569-612620)
chr3 (44-99)||(22405117-22405173)
chr3 (62-94)||(48593227-48593259)
[»] chr1 (3 HSPs)
chr1 (41-122)||(14231052-14231133)
chr1 (44-94)||(34890267-34890317)
chr1 (41-122)||(31032448-31032529)
[»] chr5 (12 HSPs)
chr5 (41-112)||(12399319-12399390)
chr5 (42-129)||(32741358-32741445)
chr5 (42-129)||(43221607-43221694)
chr5 (41-94)||(14509902-14509955)
chr5 (41-94)||(28499788-28499841)
chr5 (41-109)||(7065651-7065719)
chr5 (42-122)||(26179751-26179831)
chr5 (44-131)||(30046351-30046438)
chr5 (46-112)||(22398108-22398174)
chr5 (42-111)||(25840579-25840649)
chr5 (43-131)||(19851768-19851857)
chr5 (42-94)||(20269523-20269575)
[»] chr7 (1 HSPs)
chr7 (42-131)||(12810316-12810404)
[»] chr6 (5 HSPs)
chr6 (41-98)||(3846437-3846494)
chr6 (42-111)||(26296273-26296342)
chr6 (41-85)||(674140-674184)
chr6 (44-96)||(8050987-8051039)
chr6 (55-111)||(8051042-8051098)
[»] scaffold0110 (1 HSPs)
scaffold0110 (46-94)||(1617-1665)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 1358776 - 1358409
Alignment:
Q  10 aagaatattatatgaagaaattactctctccgtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttata 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1358776 aagaatattatatgaagaaattactccctccgtcacatttataactaaaaaataatattttagattcattgaataatttatgtatctgatcatatttata 1358677  T
Q  110 gaccagatacattgactattcattcaataaacctaagaaaatgnnnnnnnattataattgtgattggaaggaatacaaatttgtatcacactaaaatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||       
T  1358676 gaccagatacattgactattcattcaataaacctaagaaaatgttttttgattataaatgtgattggaaggaatacaaatttgtatcacactaaaat--- 1358580  T
Q  210 agatttagatttgattcaccccaccaatttatgtatattgaatttctaaagggctgatgcttacaaattggtcaaatgtagaaattaatggcaatgacct 309  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1358579 ---tttagatttgattcaccccaccaatttatgtatattgaatttctaaagggctgatgcttacaaattggtcaaatgtagaaattaatggcaatgacct 1358483  T
Q  310 gaaagaagtaaggtgaggcaagtgaacggatatgccctacacacaaacaaataacaacctttttgtcctatctc 383  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1358482 gaaagaattaaggtgaggcaagtgaacagatatgccctacacacaaacaaataacaacctttttgtcctatctc 1358409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 41253717 - 41253807
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    |||| |||||||| ||||||| ||| || || | |||||||| |||| |||||| | ||||||||||||||| ||||||||||||||||||    
T  41253717 gtcatatttataagtaaaaaacaattttctaaactcattgaacaattaatgtatctcatcacatttatagactagatacattgactattca 41253807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 7645466 - 7645547
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||||||||||  ||||||  |  ||||||||||||  ||||||| |||||| ||||||||||| ||||||| |||||||    
T  7645466 gtcacatttataagcaaaaaaagactttttagattcatgaaataattaatgtatttgatcacatttgtagaccaaatacatt 7645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 25931579 - 25931660
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattg 123  Q
    |||||||||||| ||||||||| |||||||  || ||  ||||||| |||||| || ||||||||||||| || ||||||||    
T  25931579 tcacatttataaataaaaaatattattttacttttatcaaataattaatgtatttggtcacatttatagatcaaatacattg 25931660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 25997451 - 25997370
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    ||||||||||||| ||||||  ||| |||||| || ||||||| ||| || ||||||||||||| |||| | ||||||||||    
T  25997451 gtcacatttataaataaaaaccaattttttaggtttattgaatgattaatatatatgatcacatctataaatcagatacatt 25997370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 27279493 - 27279574
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||||||||||  |||||||||| |||||| |||||||||||| | ||||||  ||||| | ||||||  ||||||||||    
T  27279493 gtcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatccgatcataattataggtcagatacatt 27279574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 9114056 - 9113981
Alignment:
Q  41 gtcacatttataactaaaaaataatatttt--agattcattgaataatttatgtatatgatcacatttatagacca 114  Q
    |||||||||||||  ||||||  |||||||  ||||||||||||||||| |||||| |  ||||||||||||||||    
T  9114056 gtcacatttataagcaaaaaactatattttttagattcattgaataattaatgtatctagtcacatttatagacca 9113981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 11564994 - 11565059
Alignment:
Q  29 attactctctccg-tcacatttataactaaaaaataatattttagattcattgaataatttatgta 93  Q
    ||||||| ||||| ||||||||||||  |||||| || ||||||||| |||||||||||| |||||    
T  11564994 attactccctccggtcacatttataagcaaaaaacaacattttagatacattgaataattaatgta 11565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 32516268 - 32516215
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||||| ||||| | ||| ||||| ||||||||||||||| ||||||    
T  32516268 gtcacatttataagtaaaacacaattttttaaattcattgaataattaatgtat 32516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 31719187 - 31719231
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataa 85  Q
    ||||||||||||| ||||||| ||  |||||||||||||||||||    
T  31719187 gtcacatttataagtaaaaaacaactttttagattcattgaataa 31719231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 42662690 - 42662776
Alignment:
Q  44 acatttataactaaaaaataatatttt-agattcattgaataatttatgtatatgatcacatttatagaccagatacattgactatt 129  Q
    |||||||||| ||||||||||| |||| | ||| ||||||||||| |||||| |||||| ||||||||||| |||||||||| ||||    
T  42662690 acatttataaataaaaaataatttttttaaatttattgaataattaatgtatctgatcaaatttatagacctgatacattgattatt 42662776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 20694553 - 20694510
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaata 84  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  20694553 gtcacatttataactaaaaaataattttttagatacattgaata 20694510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 14578512 - 14578568
Alignment:
Q  44 acatttataactaaaaaataatattttagattcattgaataatttatgtatatgatc 100  Q
    ||||||||||  ||||| ||||||||||| |||||||||||||| |||||| |||||    
T  14578512 acatttataagcaaaaattaatattttaggttcattgaataattaatgtatctgatc 14578568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 9428069 - 9428114
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatt 87  Q
    |||||||||||| ||||||||||| ||||| || ||||||||||||    
T  9428069 tcacatttataaataaaaaataattttttaaatacattgaataatt 9428114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 10184663 - 10184630
Alignment:
Q  67 ttttagattcattgaataatttatgtatatgatc 100  Q
    ||||||||||||||||||||| ||||||||||||    
T  10184663 ttttagattcattgaataattgatgtatatgatc 10184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 6354764 - 6354732
Alignment:
Q  62 taatattttagattcattgaataatttatgtat 94  Q
    |||| ||||||||||||||||||||||||||||    
T  6354764 taattttttagattcattgaataatttatgtat 6354732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 9503675 - 9503623
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||||  |||||||||  |||||||||||||||||| || ||||||    
T  9503675 tcacatttataaacaaaaaataactttttagattcattgaatatttaatgtat 9503623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 39993192 - 39993123
Alignment:
Q  26 gaaattactctctccg-tcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||| |||||| |||||||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  39993192 gaaattactttctccggtcacatttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 38562260 - 38562170
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    |||||||||||||  |||||| ||| |||||||| |||||||||||| ||||||  | ||||||||||||  || ||||||| | ||||||    
T  38562260 gtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattattca 38562170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 22048856 - 22048913
Alignment:
Q  74 ttcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    |||||||||||||| |||||| |||||||||| ||| ||||||||||||  |||||||    
T  22048856 ttcattgaataattaatgtatttgatcacattaatacaccagatacattagctattca 22048913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 20783696 - 20783762
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttat 108  Q
    |||||||||||| |||||||| |  |||||  | |||||||||||| |||||| |||||||||||||    
T  20783696 tcacatttataaataaaaaatgactttttaagtacattgaataattaatgtatctgatcacatttat 20783762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 32645613 - 32645575
Alignment:
Q  56 aaaaaataatattttagattcattgaataatttatgtat 94  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  32645613 aaaaaataatgttttagattcattgaataattgatgtat 32645575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 55121308 - 55121227
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||||||||||  |||||||||  ||||||||| ||| ||||||| |||||| || ||||||||||| |||| |||||||    
T  55121308 gtcacatttataagcaaaaaataactttttagatttattaaataattaatgtatttggtcacatttataaaccaaatacatt 55121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 25109039 - 25108984
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatg 97  Q
    |||||||||||| ||||||||||| |||||  |||||||||||| | |||||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtatatg 25108984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 49658396 - 49658341
Alignment:
Q  67 ttttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||| ||||||||||||||  ||||| |||||||||||||||| || |||||||    
T  49658396 ttttaggttcattgaataattattgtatctgatcacatttatagatcatatacatt 49658341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 18093784 - 18093874
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    |||||||||||||  |||||| ||  ||||| || |||||||||||| |||||| |  ||||||||||||  |||||||||| | ||||||    
T  18093784 gtcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtatcttgtcacatttataggtcagatacattaattattca 18093874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 28732464 - 28732546
Alignment:
Q  41 gtcacatttataactaaaaaat-aatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    ||||||||||||| |||||| | || ||||||| |||||||||||| | |||||| |  ||||||||||||||| ||| ||||    
T  28732464 gtcacatttataagtaaaaacttaacattttaggttcattgaataactaatgtatttagtcacatttatagaccggattcatt 28732546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 31836418 - 31836507
Alignment:
Q  42 tcacatttataa-ctaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    |||||||||||| | ||||||||||| || || |||||||||||||| |||||| |  ||| |||||||||||| ||||||| | ||||||    
T  31836418 tcacatttataagcaaaaaaataataatt-aggttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattca 31836507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 19790857 - 19790788
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatag 110  Q
    ||||||||||||| ||||||| | | |||||||| ||||||||| || ||||||   |||||||||||||    
T  19790857 gtcacatttataagtaaaaaacacttttttagatacattgaatacttgatgtatgcaatcacatttatag 19790788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 50561051 - 50561104
Alignment:
Q  29 attactctctccg-tcacatttataactaaaaaataatattttagattcattga 81  Q
    ||||||||||||| ||| ||||||||  |||||||||| |||||||||||||||    
T  50561051 attactctctccgatcatatttataagcaaaaaataattttttagattcattga 50561104  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 612569 - 612620
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||||  |||||||||||||||||||| ||||||||| | ||||||    
T  612569 tcacatttataag-aaaaaataatattttagatttattgaataactaatgtat 612620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 22405173 - 22405117
Alignment:
Q  44 acatttataactaaaaaata-atattttagattcattgaataatttatgtatatgat 99  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||| |||||| ||||    
T  22405173 acatttataataaaaaaatatatattttagattcattcaataattaatgtatctgat 22405117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 48593259 - 48593227
Alignment:
Q  62 taatattttagattcattgaataatttatgtat 94  Q
    |||| ||||||||||||||||||||||||||||    
T  48593259 taattttttagattcattgaataatttatgtat 48593227  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 14231052 - 14231133
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||||||||||  |||||||||  |||||  |||||||||| ||| |||||| | |||||| ||||||||||||||||||    
T  14231052 gtcacatttataagcaaaaaataactttttacgttcattgaatgattaatgtatttaatcacaattatagaccagatacatt 14231133  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 34890317 - 34890267
Alignment:
Q  44 acatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| ||||||    
T  34890317 acatttataagaaaaaaatactattttagattcattgaataattaatgtat 34890267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 31032448 - 31032529
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    |||||||| ||||  |||||| ||  ||||||||||||  ||||||| |||||| |  |||||||||||||||| |||||||    
T  31032448 gtcacattaataagcaaaaaacaactttttagattcatgaaataattaatgtatctagtcacatttatagaccaaatacatt 31032529  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 12399390 - 12399319
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagac 112  Q
    |||||||||||||  |||||| ||||||||||||| ||||||||||| || ||| |  ||||||||||||||    
T  12399390 gtcacatttataatcaaaaaacaatattttagatttattgaataattaatatatctagtcacatttatagac 12399319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 32741445 - 32741358
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactatt 129  Q
    ||||||||||||  |||||||||| |||||| |||||| |||||||  ||||| || ||||||||||||||   ||||||||| ||||    
T  32741445 tcacatttataagcaaaaaataattttttaggttcattaaataattattgtatctggtcacatttatagactcaatacattgattatt 32741358  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 43221694 - 43221607
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactatt 129  Q
    ||||||||||||  |||||||||  |||||| || |||||| |||| |||||| || ||||||||| ||||| |||||||||| ||||    
T  43221694 tcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtatgtggtcacatttacagacccgatacattgattatt 43221607  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 14509955 - 14509902
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||||| ||||||    
T  14509955 gtcacatttataaataaaaaataattttttagatatattgaataattaatgtat 14509902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 28499788 - 28499841
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| | ||||||    
T  28499788 gtcacatttataagcaaaaaataattttttagattcattgaataactaatgtat 28499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 7065719 - 7065651
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttata 109  Q
    |||||||||||||  |||||  ||  ||||| ||||||||||||||| |||||| ||||||||||||||    
T  7065719 gtcacatttataagcaaaaatcaactttttaaattcattgaataattaatgtatctgatcacatttata 7065651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 26179831 - 26179751
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacatt 122  Q
    ||||||||||||  |||||| |  |||||||||| ||  ||||||| ||||||||  |||||||||||||||| |||||||    
T  26179831 tcacatttataagcaaaaaacatcattttagatttataaaataattaatgtatatagtcacatttatagaccaaatacatt 26179751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 30046438 - 30046351
Alignment:
Q  44 acatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    ||||||||||  ||||||| | ||||||||| |||||||||||| ||||||  |  |||||||||||   ||||||||| ||||||||    
T  30046438 acatttataagcaaaaaatcacattttagatacattgaataattaatgtatccggccacatttataggttagatacattaactattca 30046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 22398174 - 22398108
Alignment:
Q  46 atttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagac 112  Q
    |||||||| ||||| | ||  ||||||||||||||||||||| |||||| || ||| ||||||||||    
T  22398174 atttataaataaaatacaactttttagattcattgaataattaatgtatttggtcatatttatagac 22398108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 25840579 - 25840649
Alignment:
Q  42 tcacatttataactaaaaaataatatttt-agattcattgaataatttatgtatatgatcacatttataga 111  Q
    |||||||||||| ||||||| ||| |||| | ||||||||||||| | |||||| || |||||||||||||    
T  25840579 tcacatttataagtaaaaaacaatttttttaaattcattgaataagtaatgtatttggtcacatttataga 25840649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 19851768 - 19851857
Alignment:
Q  43 cacatttataactaaaaaataatattttagattcattgaataatttatgtatatgat-cacatttatagaccagatacattgactattca 131  Q
    |||||||||||  |||||||||| ||||||||||||| |||| ||  ||||| ||||  | |||||||||||| ||||||| | ||||||    
T  19851768 cacatttataaacaaaaaataattttttagattcattaaatacttattgtatttgatatatatttatagaccaaatacattaagtattca 19851857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 20269575 - 20269523
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||||||  |||||| ||| |||||||| |||||||||||| ||||||    
T  20269575 tcacatttataaacaaaaaacaattttttagatacattgaataattaatgtat 20269523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 12810316 - 12810404
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttatagaccagatacattgactattca 131  Q
    ||||||||||||| |||||  ||  |||||||| |||||||||||| ||||||  | ||||||||| || ||||||||||| | ||||||    
T  12810316 tcacatttataaccaaaaaccaacgttttagatacattgaataattaatgtattcggtcacattta-aggccagatacattaattattca 12810404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 3846437 - 3846494
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataatttatgtatatga 98  Q
    |||||||||||||  |||||||||| |||||  |||||||||||| | ||||||||||    
T  3846437 gtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtatatga 3846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 26296342 - 26296273
Alignment:
Q  42 tcacatttataactaaaaaataatattttagattcattgaataatttatgtatatgatcacatttataga 111  Q
    |||||||||||| |||||||| || ||||| || |||||||||||| | |||||   |||||||||||||    
T  26296342 tcacatttataagtaaaaaatgattttttaaatacattgaataattaacgtatacagtcacatttataga 26296273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 674184 - 674140
Alignment:
Q  41 gtcacatttataactaaaaaataatattttagattcattgaataa 85  Q
    |||||||||||||  |||||| ||| |||||||||||||||||||    
T  674184 gtcacatttataagcaaaaaacaattttttagattcattgaataa 674140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 8050987 - 8051039
Alignment:
Q  44 acatttataactaaaaaataatattttagattcattgaataatttatgtatat 96  Q
    ||||||||||| |||||||||| ||||| ||  ||||||||||| ||||||||    
T  8050987 acatttataaccaaaaaataattttttaaatatattgaataattaatgtatat 8051039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 8051098 - 8051042
Alignment:
Q  55 taaaaaataatattttagattcattgaataatttatgtatatgatcacatttataga 111  Q
    ||||||||||| |||| ||| |||| ||||||| |||||| | ||||||||||||||    
T  8051098 taaaaaataattttttggatacatttaataattaatgtatttaatcacatttataga 8051042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 1665 - 1617
Alignment:
Q  46 atttataactaaaaaataatattttagattcattgaataatttatgtat 94  Q
    ||||||||  ||||| |||| ||||||||||||||||||||| ||||||    
T  1665 atttataagaaaaaattaattttttagattcattgaataattgatgtat 1617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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