View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_39 (Length: 391)
Name: NF13040_low_39
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 34835677 - 34836049
Alignment:
| Q |
1 |
tgaaacaatgagtgtcccttttggttagaagattcaaatgaagaacaaccattacccaaatgagcaccatttctaccataacattggagtcttgttctca |
100 |
Q |
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| T |
34835677 |
tgaaacaatgagtgtcccttttggtgagaagattcaaatgaagaacaaccattacccaaatgagcaccatttctaccataacattggagtcttgttctca |
34835776 |
T |
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| Q |
101 |
cattatcaccttttcctagataaaccacaactactcgacacgagtcagtggcaagcttgtaaatttcacgccccaacccgctagtcgatgcagctactcc |
200 |
Q |
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| T |
34835777 |
cattatcaccttttcctagataaaccacaactactcgacacgagtcagtggaaagcttgtaaatttcacgccccaacccgctagtcgatgcagctactcc |
34835876 |
T |
|
| Q |
201 |
gagctcatagactccaggtccagaattttttggtaggttatggattctatatcttgtagatccttcatttcctttggagtagtcttcccaatcagaagga |
300 |
Q |
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| T |
34835877 |
gagctcatagactccaggtccagaattttctggtaggttatggattctatatcttgtagatccttcctttcctttggagtagtcttcccaatcagaagga |
34835976 |
T |
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| Q |
301 |
ccaataagaatctgaaaccaattattaacatgagcaatcaaaatatatgtattcggattgcgacgcaatcaat |
373 |
Q |
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| T |
34835977 |
ccaataagaatctgaaaccaattattaacatgaacaatcaatatatatgtattcggattgggacgcaatcaat |
34836049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 52 - 342
Target Start/End: Complemental strand, 35335427 - 35335137
Alignment:
| Q |
52 |
ttacccaaatgagcaccatttctaccataacattggagtcttgttctcacattatcaccttttcctagataaaccacaactactcgacacgagtcagtgg |
151 |
Q |
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|||| ||||||||| ||||| || ||||||| |||||||||| ||||||||| ||| ||||||| || ||||||||||||| |||| | |||||||| |
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| T |
35335427 |
ttactcaaatgagctccattcctgccataacgctggagtcttgctctcacattgtcagcttttccaaggtaaaccacaactatacgacgagggtcagtgg |
35335328 |
T |
|
| Q |
152 |
caagcttgtaaatttcacgccccaacccgctagtcgatgcagctactccgagctcatagactccaggtccagaattttttggtaggttatggattctata |
251 |
Q |
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|||||||||||||||||| |||| ||| ||| |||||||||| ||||| || || || || || | || | || ||||| || || || || |
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| T |
35335327 |
aaagcttgtaaatttcacggcccagattactacgcgacacagctactccaagctcgtacacccccggacccaatttctgaggaaggttgtgaatcctgta |
35335228 |
T |
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| Q |
252 |
tcttgtagatccttcatttcctttggagtagtcttcccaatcagaaggaccaataagaatctgaaaccaattattaacatgagcaatcaaa |
342 |
Q |
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||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||| |||| |
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| T |
35335227 |
tctggtagatccttccttttctttggaatagtcttcccaatcagaaggaccaataagaatctgaaaacagtttataacatgagcaaccaaa |
35335137 |
T |
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