View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_44 (Length: 375)
Name: NF13040_low_44
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 40397682 - 40397559
Alignment:
| Q |
18 |
aggtgtaactgttgaatgactgagtggcagtatgagccagcaaattaggggcatgctgacgaaaatatgattggcttgtttagaacaatgcacaatgacc |
117 |
Q |
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| T |
40397682 |
aggtgtaactgttgattgactgagtggcagtatgagccagcaaattaggggcgtgctgacgaaaatatgattggcttgtttagaacaatgcacaatgacc |
40397583 |
T |
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| Q |
118 |
aaagtgctcctgacttcatatcta |
141 |
Q |
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| T |
40397582 |
aaagtgctcctgacttcatatcta |
40397559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 40397439 - 40397385
Alignment:
| Q |
257 |
aaagacctataaaaatatattgaaaggatatgctaaatttcatagcattcttgag |
311 |
Q |
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| T |
40397439 |
aaagacctataaaaatatattgaaaggatacgctaaatttcacagcattcttgag |
40397385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 38643731 - 38643779
Alignment:
| Q |
88 |
ttggcttgtttagaacaatgcacaatgaccaaagtgctcctgacttcat |
136 |
Q |
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| T |
38643731 |
ttggcttgttcagaccaatgcacaatgaccaaagtgcccctaacttcat |
38643779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30282595 - 30282639
Alignment:
| Q |
263 |
ctataaaaatatattgaaaggatatgctaaatttcatagcattct |
307 |
Q |
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| T |
30282595 |
ctataaaaatatatagaaaggctatgcaaagtttcatagcattct |
30282639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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