View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_47 (Length: 355)
Name: NF13040_low_47
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 3799200 - 3799518
Alignment:
| Q |
21 |
ggccattgttaacatggatgctcatgtgaaacatatgatgcatgatgcacaatattttaacttttgtatttacacacttatattgtgaaccatcaacata |
120 |
Q |
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| T |
3799200 |
ggccattgttaacatggatgctcaagtgaaacatatgataca-------caatattttaacttttgtatttacacacttatattgtgaaccatcaacata |
3799292 |
T |
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| Q |
121 |
ttattttttctcttcaatctggttatattttgtttcttaaatagcaatgaaaatatacttctgtctttattggagagtcgggtgaagttgtaaacatgct |
220 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3799293 |
ttatttttgctcttcaatctggttatattttgtttcttaaatagcaatgaaaatatacttctgtctttattggagagtcgggtgaagttgtaaacatgct |
3799392 |
T |
|
| Q |
221 |
atcttcttcgtctca-nnnnnnnncttcgatttcttataaattttctccaaatccaaagggattttacaaatttaaactttggttgaccatgtcatggga |
319 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3799393 |
atcttcttcgtctaatttttttttcttcgatttcttataaattttctccaaatccaaagggattttacaaatttaaactttggttgaccatgtcatggga |
3799492 |
T |
|
| Q |
320 |
gtaaatttttcgagaacaaatctctg |
345 |
Q |
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||| |||||||||||||||||||||| |
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| T |
3799493 |
gtacatttttcgagaacaaatctctg |
3799518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 3809904 - 3810004
Alignment:
| Q |
21 |
ggccattgttaacatggatgctcatgtgaaacatatgatgcatgatgcacaatattttaacttttgtatttacacacttatattgtgaaccatcaacata |
120 |
Q |
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|||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |
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| T |
3809904 |
ggccattgctaatatgtatgctcaagtgaaacatatgatgcatgatgcacaatatttgaacttttgtatttacacattcatattgtgaaccatcaacata |
3810003 |
T |
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| Q |
121 |
t |
121 |
Q |
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| T |
3810004 |
t |
3810004 |
T |
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