View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_48 (Length: 347)
Name: NF13040_low_48
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 35373076 - 35373383
Alignment:
| Q |
12 |
tatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaattaaccaattgtgacaaatgggttt |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
35373076 |
tatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatatcctcacaaattaaccaagtgtgacaaatgggttt |
35373175 |
T |
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| Q |
112 |
atgttatcgatatacattcttcttgtttgagttatcaaagtttgtttttcattatcaaaacatgaaggttgaccggagtttttgaactctaagatttcca |
211 |
Q |
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| T |
35373176 |
acattattgatatacattcttcttgtttgagttatcaaagtttgtttttcattatcaaaacatgaaggttgaccggagtttttgaactctaagatttcca |
35373275 |
T |
|
| Q |
212 |
tgtatgttctnnnnnnnnnnnnnnnnntccatttatgctatttaaatttaagatgttttgaaattactactaaaagtgaatggttactttcattttatat |
311 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373276 |
tgtatgttctaaaaaa------------ccatgtatgctatttaaatttaagatgttttgaaattactactaaaagtgaatggttactttcattttatat |
35373363 |
T |
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| Q |
312 |
ctcaatttatcgatattact |
331 |
Q |
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||| |||||||||||||||| |
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| T |
35373364 |
ctcgatttatcgatattact |
35373383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 35360707 - 35360825
Alignment:
| Q |
12 |
tatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaattaaccaattgtgacaaatgggttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35360707 |
tatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaattaaccaagtgtgacaaatgggttt |
35360806 |
T |
|
| Q |
112 |
atgttatcgatatacattc |
130 |
Q |
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| T |
35360807 |
acattatcgatatacattc |
35360825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 35383079 - 35383140
Alignment:
| Q |
12 |
tatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaaga |
73 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35383079 |
tatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttccaacctctaaaga |
35383140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 19625650 - 19625613
Alignment:
| Q |
21 |
cattgagaaagtttgggaagcaagtattcgtcatggtt |
58 |
Q |
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| T |
19625650 |
cattgagaaagtatgggaagcaagtattcgtcatggtt |
19625613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 19691220 - 19691260
Alignment:
| Q |
21 |
cattgagaaagtttgggaagcaagtattcgtcatggtttcc |
61 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19691220 |
cattgagaaagtatgggaagcaagtattcgccatggtttcc |
19691260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 19701805 - 19701845
Alignment:
| Q |
21 |
cattgagaaagtttgggaagcaagtattcgtcatggtttcc |
61 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19701805 |
cattgagaaagtatgggaagcaagtattcgccatggtttcc |
19701845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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