View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_49 (Length: 347)
Name: NF13040_low_49
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_49 |
 | |
|
| [»] scaffold0753 (1 HSPs) |
| | |
|
| [»] scaffold0135 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 9134212 - 9133887
Alignment:
| Q |
20 |
gatgttacatgtatacacacatcaaagcatggatatgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactcag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9134212 |
gatgttacatgtatacacacatcaaagcatggatatgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactcag |
9134113 |
T |
|
| Q |
120 |
ctttgtaacaattcaaactaaatagcttccttgtttacttacttattgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9134112 |
ttttgtaacaattcaaactaaatagcttccttgttta----cttattgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaa |
9134017 |
T |
|
| Q |
220 |
gaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctggaaaaatcatgaaagatgtcactccagaaatgg |
316 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9134016 |
gaggaggcacctcctgacatgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctggaaaaatcatgaaagatgtcactccagaaatgg |
9133917 |
T |
|
| Q |
317 |
taaccgcatatttaagtattatctacccac |
346 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |
|
|
| T |
9133916 |
taaccgcatatttaagtattttcttcccac |
9133887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 9309153 - 9309014
Alignment:
| Q |
185 |
tacattttcacattgtagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcc |
281 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||| ||||||| |||||||||||||||| ||| || |||| |||| ||||||| || |
|
|
| T |
9309153 |
tacattttcactttgtagttacaatgcaaggccaaaaggaggcacctcctgacatgcaatgcaaagataagtttctccttcagagcgtagttgcaagccc |
9309054 |
T |
|
| Q |
282 |
tggaaaaatcatgaaagatgtcactccagaaatggtaacc |
321 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||| |
|
|
| T |
9309053 |
tggagcaacggcaaaagatatcactccagaaatggtaacc |
9309014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 9257446 - 9257518
Alignment:
| Q |
47 |
catggatatgttggcaaaatgtttacattgga-ttagttggacaatgtcatgtattctgttgtttcatactca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||| |||||||||||| ||||||| ||| ||||||| |
|
|
| T |
9257446 |
catggatatgttggcataatgtttacatgggatttagttgcacaatgtcatgtgttctgttcttttatactca |
9257518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 9156199 - 9156255
Alignment:
| Q |
179 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctccta |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
9156199 |
catatttacattttcactttgtagttacaatgcaagctcaaaagaaggcacctccta |
9156255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 9168280 - 9168192
Alignment:
| Q |
200 |
tagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctgga |
285 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| || ||||| || | |||||||||||||| |
|
|
| T |
9168280 |
tagttacaatgcaagccctagaggaggcacctcctgacatgcaatgcaaagataagtttctccttcaaagcatagttgcaaggcctgga |
9168192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 9257563 - 9257651
Alignment:
| Q |
200 |
tagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctgga |
285 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| || ||||| || | |||||||||||||| |
|
|
| T |
9257563 |
tagttacaatgcaagccctagaggaggcacctcctgacatgcaatgcaaagataagtttctccttcaaagcatagttgcaaggcctgga |
9257651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 9300539 - 9300613
Alignment:
| Q |
179 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagata |
250 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| | || |||||| ||||||| ||||||||||| |||| |
|
|
| T |
9300539 |
catatttacattttcactttgcagttacaatgcaaggctaaaaggaggcacctcctgacatgcaatgcaatgata |
9300613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 9194573 - 9194629
Alignment:
| Q |
179 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctccta |
235 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
9194573 |
catatttacattttcacttggaagttacaatgcaagctcaaaagaaggcacctccta |
9194629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 9232357 - 9232421
Alignment:
| Q |
54 |
atgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactca |
118 |
Q |
| |
|
|||||| || ||||||||||| |||| |||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
9232357 |
atgttgacataatgtttacatgtgatttgttgtacaatgtcatgtagtatgttctttcatactca |
9232421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 5911 - 5957
Alignment:
| Q |
165 |
ttgaatgtttgtgacatatttacattttcacattgtagttacaatgc |
211 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
5911 |
ttgactgtttgtgtcatatttacattttcacattgcagttacaatgc |
5957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 38223 - 38287
Alignment:
| Q |
54 |
atgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactca |
118 |
Q |
| |
|
|||||| || ||||||||||| |||| |||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
38223 |
atgttgacataatgtttacatgtgatttgttgtacaatgtcatgtagtatgttctttcatactca |
38287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University