View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_5 (Length: 849)
Name: NF13040_low_5
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_5 |
 | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Complemental strand, 31737913 - 31737190
Alignment:
| Q |
18 |
aggtgtatggtgggatggaagggcgggcagagaagttgatggaggatattaatgggcttgatgagaagggggaggaaggtggtttgagtgatgcggaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31737913 |
aggtgtatggtgggatggaagggcgggcggagaagttgatggaggatattaatgggcttgatgagaagggggaggaaggtagtttgagtgatgcggaaat |
31737814 |
T |
|
| Q |
118 |
tcttattcggaaggataagtttagtgagttatggaggcttcttaaggcgaaagatgcgatggcggtgcaaaggtcaagatctaaatggcctaaggaaggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737813 |
tcttattcggaaggataagtttagtgagttatggaggcttcttaaggcgaaagatgcgatggcggtgcaaaggtcaagatctaaatggcctaaggaaggt |
31737714 |
T |
|
| Q |
218 |
gatgttaattctagattttttcataattgtataaaatcaagagggtcgagaaattctattaaggtcttaaaggtggatgatggttgggttactttgcctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737713 |
gatgttaattctagattttttcataattgtataaaatcaagagggtcgagaaattctattaaggccttaaaggtggatgatggttgggttactttgcctt |
31737614 |
T |
|
| Q |
318 |
cggatgtgaggaaggccattgtggattttttcactaaccatgtggatgatattgcgtgggagaggcctaagttggatggagtgccgtttgagaggctttc |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737613 |
cggatgtgaggaaggccgttgtggattttttcactaaccatgtggatgatattgcgtgggagaggcctaagttggatggagtgccgtttgagaggctttc |
31737514 |
T |
|
| Q |
418 |
tttggaggaaaatgaggaattgattattaagcctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggat |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737513 |
tttggaggaaaatgaggaattg---attaagcctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggat |
31737417 |
T |
|
| Q |
518 |
ggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737416 |
ggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcca |
31737317 |
T |
|
| Q |
618 |
aaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737316 |
aaagtttcatctccgatggctttgaaggattatcgtcctatatctttgattggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccg |
31737217 |
T |
|
| Q |
718 |
gggtgatgaattcgattatacaaatta |
744 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31737216 |
gggtgatgaattcgattatacaaatta |
31737190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 652
Target Start/End: Original strand, 13852294 - 13852397
Alignment:
| Q |
549 |
tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggatt |
648 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || || || ||| |||||||||| |
|
|
| T |
13852294 |
tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggatt |
13852393 |
T |
|
| Q |
649 |
atcg |
652 |
Q |
| |
|
|||| |
|
|
| T |
13852394 |
atcg |
13852397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 810 - 842
Target Start/End: Complemental strand, 31737124 - 31737092
Alignment:
| Q |
810 |
tactgtatgggtgcgctactgctgtctgtgctg |
842 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31737124 |
tactgtatgggtgcgctactgctgtctgtgctg |
31737092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 55351269 - 55351311
Alignment:
| Q |
484 |
agatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
55351269 |
agatagtgatggtaataaaagcccgggtccggatggatttaat |
55351311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 528 - 736
Target Start/End: Complemental strand, 8247247 - 8247039
Alignment:
| Q |
528 |
aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat |
627 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| | ||||||||||| ||||| | |||||||||| |
|
|
| T |
8247247 |
aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat |
8247148 |
T |
|
| Q |
628 |
ctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaa |
727 |
Q |
| |
|
|||| |||||| |||||||||| || |||| || ||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||| || | ||||| |
|
|
| T |
8247147 |
ctccaatggctatgaaggattaccgctctatttcattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaa |
8247048 |
T |
|
| Q |
728 |
ttcgattat |
736 |
Q |
| |
|
||| ||||| |
|
|
| T |
8247047 |
ttctattat |
8247039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 8247754 - 8247596
Alignment:
| Q |
47 |
gagaagttgatggaggatattaatgggcttgatgagaagggggaggaaggtggtttgagtgatgcggaaattcttattcggaaggataagtttagtgagt |
146 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||| |||| |||| |||||||| |||||||| ||| || ||||||||| |||| |
|
|
| T |
8247754 |
gagaagttgatggaggatattaaggggcttgatgtaaaggggg-ggaaagtgggttgagtgacatggaaattcgaggtcgtaaagataagttttgtgaac |
8247656 |
T |
|
| Q |
147 |
tatggaggcttcttaaggcgaaagatgcgatggcggtgcaaaggtcaagatctaaatggc |
206 |
Q |
| |
|
||||||||||||||||||| ||||||| || || ||| || ||||| |||||||||||| |
|
|
| T |
8247655 |
tatggaggcttcttaaggctaaagatgtgaaggtggtaaaatggtcacgatctaaatggc |
8247596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 521 - 667
Target Start/End: Complemental strand, 12829388 - 12829238
Alignment:
| Q |
521 |
tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc |
616 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||||| |||| ||||||| ||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
12829388 |
tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc |
12829289 |
T |
|
| Q |
617 |
aaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct |
667 |
Q |
| |
|
||||||||||||| | ||||||||||||||| | ||||| |||||||| |
|
|
| T |
12829288 |
ggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct |
12829238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 526
Target Start/End: Original strand, 44162403 - 44162480
Alignment:
| Q |
449 |
cctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
|||||||| ||| |||| ||||| |||||||| | |||||| || || ||||||| ||||| ||||||||||||||| |
|
|
| T |
44162403 |
cctttttccttattggaaatagaggcggtggttaaagatagcgatggggataaaagcccgggaccggatggttttaat |
44162480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 672
Target Start/End: Complemental strand, 40198019 - 40197872
Alignment:
| Q |
525 |
atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt |
624 |
Q |
| |
|
||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || | |||||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
40198019 |
atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt |
40197920 |
T |
|
| Q |
625 |
catctccgatggctttgaaggattatcgtcctatatctttgcttggtt |
672 |
Q |
| |
|
|| || |||||||||| ||||| || || || ||||||||||||| |
|
|
| T |
40197919 |
tgtcccctatggctttgagggattttcaaccgatttctttgcttggtt |
40197872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 40388210 - 40388157
Alignment:
| Q |
473 |
gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
40388210 |
gcggtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaat |
40388157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 704
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
| Q |
588 |
atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac |
687 |
Q |
| |
|
||||| |||| |||||| |||||||||| ||||| |||||| |||||| ||||||||||| | | || |||| ||||| || || ||||| ||||||| |
|
|
| T |
40388063 |
atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac |
40387964 |
T |
|
| Q |
688 |
ttgccaaggttctagca |
704 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
40387963 |
tagccaaggttttagca |
40387947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 688
Target Start/End: Original strand, 29299614 - 29299780
Alignment:
| Q |
522 |
ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaag |
621 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |||||||||||||| | |||| | | | |||||||||||||| |||||||| ||||| | |
|
|
| T |
29299614 |
ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaagg |
29299713 |
T |
|
| Q |
622 |
tttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattact |
688 |
Q |
| |
|
| || || |||||| |||||||| | |||||| || ||| | |||||| || | ||||| ||||| |
|
|
| T |
29299714 |
tgtcctcaccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttact |
29299780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
| Q |
485 |
gatagtgacggtaataaaagtccgggtccggatggttt |
522 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10428279 |
gatagtgacggcgataaaagtccgggtccggatggttt |
10428316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 526
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
| Q |
484 |
agatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8675 |
agatagtgatggtaataaaagtccgggtccggatggttttaat |
8633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 670
Target Start/End: Original strand, 4901708 - 4901850
Alignment:
| Q |
528 |
aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat |
627 |
Q |
| |
|
|||||||| || || ||| | ||||||||||| || ||||||||||| |||| || | ||||||||||| ||||| ||||| |||||||| |||| | |
|
|
| T |
4901708 |
aaggatgaagttagaattatgtttgatcaatttcacgctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttctt |
4901807 |
T |
|
| Q |
628 |
ctccgatggctttgaaggattatcgtcctatatctttgcttgg |
670 |
Q |
| |
|
| || ||||||| ||||||| |||||| || ||||||||||| |
|
|
| T |
4901808 |
cccctttggcttttaaggattttcgtcccatttctttgcttgg |
4901850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 703
Target Start/End: Original strand, 25659795 - 25659977
Alignment:
| Q |
521 |
tttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaa |
620 |
Q |
| |
|
|||||| || ||||| ||||| ||||| ||||| ||||| |||||||||||||| | || | ||| ||||| ||||||||||| |||| ||| | ||| |
|
|
| T |
25659795 |
tttaattaaagatgaagtgagaattttgtttgaccaatttcatgctaatgaggtgttgccgagaggtatgttggcttattttgtgactttaattactaaa |
25659894 |
T |
|
| Q |
621 |
gtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagc |
703 |
Q |
| |
|
|| || || || ||| |||||||||||| | || || || |||||||| ||| | || ||| ||||||| ||||| ||||| |
|
|
| T |
25659895 |
gtctcgtcccctttggagttgaaggattatagaccgatttccttgcttggatgtctctataaaatacttgcaaaggtcctagc |
25659977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 33482996 - 33483070
Alignment:
| Q |
452 |
ttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
||||||||| ||||||| || |||||||||| || |||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
33482996 |
ttttcgttattggagattgaggcggtggtgaaggagagtgacggggataaaagtccgggaccggacggttttaat |
33483070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 49454579 - 49454632
Alignment:
| Q |
473 |
gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat |
526 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
49454579 |
gcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaat |
49454632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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