View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_51 (Length: 341)
Name: NF13040_low_51
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 43360281 - 43360594
Alignment:
| Q |
10 |
attatacttaaatttgtagacctgttttataaattgtttatgacttcaataaaatccttgtttgtccatttttcaatagttacgttgttgtatgctaaat |
109 |
Q |
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| T |
43360281 |
attatacttaaatttgtagacctgttttataaattgtttatgacttcaataaaatccttgtttgtccatttttcaatagttacgttgttgtatgctaaat |
43360380 |
T |
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| Q |
110 |
tcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaa |
209 |
Q |
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| T |
43360381 |
tcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaa |
43360480 |
T |
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| Q |
210 |
gcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttctcaaggggaatgatt |
309 |
Q |
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| T |
43360481 |
gcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttctcaaggggaatgatt |
43360580 |
T |
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| Q |
310 |
gtgtactgcctaat |
323 |
Q |
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| T |
43360581 |
gtgtactgcctaat |
43360594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 43362688 - 43362768
Alignment:
| Q |
137 |
agagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggaca |
218 |
Q |
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| T |
43362688 |
agagtgaaagttgtacatttgtgtttctcatgtgctaaatt-taatttgatgcatgacctctttgacgcaaaagcatggaca |
43362768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 17637674 - 17637603
Alignment:
| Q |
190 |
atgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaa |
261 |
Q |
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| T |
17637674 |
atgacctctttgacccaaaagtatggacaaagattaaatcagtagttgatttctcaaaggaacaggtgtaaa |
17637603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 49432368 - 49432331
Alignment:
| Q |
147 |
ttgtacattagtgtttctcatgtgctaatttatgattt |
184 |
Q |
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| T |
49432368 |
ttgtacattagtgtttttcatgtgctaaattatgattt |
49432331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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