View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_52 (Length: 335)
Name: NF13040_low_52
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 48882516 - 48882198
Alignment:
| Q |
1 |
tattgctatgtatgagtacacgagtgatattgatgaaccgattcacttgtatttcaacgcgaaaccttacgaagcacaggttacagaaattgcgaaagtg |
100 |
Q |
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| T |
48882516 |
tattgctatgtatgagtacacgagtgatattgatgaaccgattcacttgtatttcaacgcgaaaccttacgaagcacaggttacagaaattgcgaaagtg |
48882417 |
T |
|
| Q |
101 |
gggtccagtgaggtgtggtatgtgattaatttgactgatgataatcacccacttcatattcatttgggtttgtttaaggttttggatcagaccgagcttg |
200 |
Q |
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| T |
48882416 |
gggtccagtgaggtgtggtatgtgattaatttgactgatgataatcacccacttcatattcatttgggtttgtttaaggttttggatcagaccgagctag |
48882317 |
T |
|
| Q |
201 |
tgaaatctgatgaatttaaggattgtatgacgaaaaataatgatgccgtgaagtgccacgtggatgagcatgcacgtgggaagaaagttaaggtgcctga |
300 |
Q |
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| T |
48882316 |
tgaaatctgatgaatttaaggattgtatgacgaaaaataatgatgctgtgaagtgccacgtggatgagcatgcacgtgggaagaaagttaaggtgcctga |
48882217 |
T |
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| Q |
301 |
ttatgagaaagggtggaag |
319 |
Q |
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||||||||||||||||||| |
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| T |
48882216 |
ttatgagaaagggtggaag |
48882198 |
T |
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