View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_55 (Length: 300)
Name: NF13040_low_55
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 29295961 - 29296233
Alignment:
| Q |
18 |
aagttgagtttaggtgccaaaattgttcaagaaggtggaagaggtaacattttcaagcatatttttgggatgcaagaggaagagaaactcttgaaagctt |
117 |
Q |
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| T |
29295961 |
aagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttcaagcatatttttgggatgcaagaggaagagaaactcttgaaagctt |
29296060 |
T |
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| Q |
118 |
ctcagtgctatttatataccacagctggtcctattgctggaattctatttatttccactgtaaaagttgcattctgcagtgaaaggccttcaagcttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29296061 |
ctcagtgctatttatataccacagctggtcctattgctggaattctatttatctccaccgtaaaagttgcattctgcagtgaaaggcctacaagcttctc |
29296160 |
T |
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| Q |
218 |
ttctgcagatggggatttagtaagggcaccttacaaagtaatcttgaaaccaactttaagctcaagtcctatg |
290 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29296161 |
ttctgcagatggggacttagtaaaggcaccttacaaagtaatcttgaaacatactttaagctcaagtcctatg |
29296233 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 42395535 - 42395356
Alignment:
| Q |
45 |
caagaaggtggaagaggtaacattttcaagcatatttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctg |
144 |
Q |
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||||||||||| ||||| |||||||||||| |||||||||| |||||||| | ||||||| | ||||| ||||| || || || ||||| || ||||||| |
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| T |
42395535 |
caagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctg |
42395436 |
T |
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| Q |
145 |
gtcctattgctggaattctatttatttccactgtaaaagttgcattctgcagtgaaaggccttcaagcttctcttctgca |
224 |
Q |
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||||||||||||| |||| || || ||||| |||||||||||| || |||||||| || || ||||||||||||| |
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| T |
42395435 |
gtcctattgctggtgttcttttcatctccacccaaaaagttgcattttgtagtgaaagaccaataaccttctcttctgca |
42395356 |
T |
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