View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_58 (Length: 294)
Name: NF13040_low_58
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 27680847 - 27680925
Alignment:
| Q |
22 |
tcagtaacacaaacccttgacagtcaaacaaaatatcataatggacaacaagcatttggaaaagactagaactattcct |
100 |
Q |
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| T |
27680847 |
tcagtaacacaaacccttgacagtcaaatgaaatatcataatggacaacacacatttggaaaagcctagacttattcct |
27680925 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 16622540 - 16622584
Alignment:
| Q |
100 |
tgtacttgcacaaagtactatcgttcctaccctcgctgataattt |
144 |
Q |
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| T |
16622540 |
tgtacctgcacaaagtactatcgttcctaccctcgttggtaattt |
16622584 |
T |
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