View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_6 (Length: 762)
Name: NF13040_low_6
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 254 - 613
Target Start/End: Complemental strand, 79076 - 78718
Alignment:
| Q |
254 |
atagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataaggc |
353 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |
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| T |
79076 |
atagatagcaacagacgatctattacacctcaaaacatccattacatccacaaaaccttgacaagcaaggatctaaataaaatgttccaaaacataaggc |
78977 |
T |
|
| Q |
354 |
aaaaacagattgttcaaaatcagtagaa-gagataagaagnnnnnnnntaagctcaaaaagatcatccctaaaggacacacagctatcataatcaactca |
452 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
78976 |
aaaaacagattgttcaaaatcaggagaaagagataagaa--aaaaaaataagctcaaaaagatcatccctaaaggacacactgctatcataatcaacgca |
78879 |
T |
|
| Q |
453 |
ataatgaaaagaatacacgaattatgcaagttgaggccacgtcgtataattagctcacatgttcaacatcaaactctatgagatatctcctatatttcac |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
78878 |
ataatgaaaagaatacacgaattatgcaaggtgaggtcacgtcctataattagctcacatgttcaacatcaaactctatgagatatgtcctatatttcac |
78779 |
T |
|
| Q |
553 |
tcgcaacttgttgacaatcttctccaactcagatacaggattcggtttcaagggcactggc |
613 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||| || || ||||||||||||||||| |
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| T |
78778 |
ccgcaacttattgacaatcttctccaactctgatacaagaatctgtttcaagggcactggc |
78718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 79414 - 79172
Alignment:
| Q |
11 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
79414 |
cacacacataatataagagttaatattctaggttgttattactgaatatgctagtattttaattctggcaacaacactatgctatagaaacaatataagt |
79315 |
T |
|
| Q |
111 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaagt |
210 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79314 |
gtattcttcaactttgaacttgccaaaacatttgcaataaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaagt |
79215 |
T |
|
| Q |
211 |
atgtttttctaaatttccaaaagagtccgagtcctttcaactt |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79214 |
atgtttttctaaatttccaaaagagtccgagtcctttcaactt |
79172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 2442576 - 2442330
Alignment:
| Q |
11 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
2442576 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatataaataatataagt |
2442477 |
T |
|
| Q |
111 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
208 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
2442476 |
gtattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
2442377 |
T |
|
| Q |
209 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
253 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| ||| ||||||||||| |
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| T |
2442376 |
gggtatatttttctaaatttccataagggtctgagccctttcaactt |
2442330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 2440997 - 2440904
Alignment:
| Q |
254 |
atagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaaca |
347 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
2440997 |
atagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaacattgacaggcaaggatctaaataaaagatgccaaaaca |
2440904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 679 - 747
Target Start/End: Complemental strand, 78652 - 78585
Alignment:
| Q |
679 |
cacatcaattggtggttagtttctcaccagttaaacaatggcaagatagcaaatcttggacgttgtaat |
747 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
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| T |
78652 |
cacatcaattggtagt-agtttctcaccagttaaacaatggtaagatagcagatcttggacgttataat |
78585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 5e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 6301170 - 6301416
Alignment:
| Q |
11 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
6301170 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatagaaataatataagt |
6301269 |
T |
|
| Q |
111 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
208 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
6301270 |
gcattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
6301369 |
T |
|
| Q |
209 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
253 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
6301370 |
gggtatatttttctaaatttccagaagagtctgagccctttcaactt |
6301416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 6307980 - 6308226
Alignment:
| Q |
11 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||| |
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|
| T |
6307980 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatataaataatataagt |
6308079 |
T |
|
| Q |
111 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
208 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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|
| T |
6308080 |
gtattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
6308179 |
T |
|
| Q |
209 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
253 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
6308180 |
gggtatatttttctaaatttccagaagagtctgagccctttcaactt |
6308226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 6301515 - 6301611
Alignment:
| Q |
254 |
atagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataa |
350 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
6301515 |
atagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaaccttgacagacaaggatctaaataaaagatgccaaaacataa |
6301611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 6308325 - 6308421
Alignment:
| Q |
254 |
atagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataa |
350 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
6308325 |
atagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaaccttgacagacaaggatctaaataaaagatgccaaaacataa |
6308421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 594
Target Start/End: Original strand, 164023 - 164102
Alignment:
| Q |
514 |
ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt |
594 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||| |
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|
| T |
164023 |
ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt |
164102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 595
Target Start/End: Original strand, 24468119 - 24468196
Alignment:
| Q |
518 |
acatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattc |
595 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
24468119 |
acattaaactctatgtgatatgtcctatatttcacccgcaactcattgacaatcttgtccaactcagatacaggattc |
24468196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 594
Target Start/End: Complemental strand, 18208386 - 18208307
Alignment:
| Q |
514 |
ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt |
594 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||| |
|
|
| T |
18208386 |
ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt |
18208307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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