View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_64 (Length: 282)
Name: NF13040_low_64
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_64 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 52 - 264
Target Start/End: Complemental strand, 30935454 - 30935244
Alignment:
| Q |
52 |
ggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgag |
151 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30935454 |
ggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctatgag |
30935355 |
T |
|
| Q |
152 |
caacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaa |
251 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
30935354 |
ctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaaa |
30935255 |
T |
|
| Q |
252 |
atgaatgaatgaa |
264 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30935254 |
a--aatgaatgaa |
30935244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 55 - 252
Target Start/End: Complemental strand, 30994360 - 30994163
Alignment:
| Q |
55 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
154 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
|
| Q |
155 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||| ||| |||||| |||| |
|
|
| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagtgttttacctgataaaa |
30994163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 30965507 - 30965416
Alignment:
| Q |
161 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaa |
252 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa |
30965416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 30965564 - 30965503
Alignment:
| Q |
55 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
116 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
30965564 |
aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University