View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_66 (Length: 281)
Name: NF13040_low_66
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 46107907 - 46108131
Alignment:
| Q |
24 |
gtgtataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaagatcaataaaaatcaactcagttgataggaaattcaaggggtcaaagtt |
123 |
Q |
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| T |
46107907 |
gtgtataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaa---------------actcagttgataggaaattcaagggttcaaagtt |
46107991 |
T |
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| Q |
124 |
caattcccactaatgtgtgatgannnnnnnggcgaggtctatcctgattttggtaagccattcaactcatctaaatttttgtatnnnnnnnttatcgttt |
223 |
Q |
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||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
46107992 |
caattcccactaatgtgtgatgacttttttggcgaggtctatcctaactttggtaagtcattcaactcatctaaatttttgtataaaaaaattatcgttt |
46108091 |
T |
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| Q |
224 |
agaagcataacttttatttatttttggtaaaaactagacc |
263 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
46108092 |
agaagcacaacttttatttatttttggtaaaaactagacc |
46108131 |
T |
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