View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_73 (Length: 270)
Name: NF13040_low_73
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_73 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 3300448 - 3300707
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattgctatctgaaatctgatttttaactggaaaccttcttactggatcg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300448 |
taaagcagcgttataccagattatgtgcatgaggat-atgacatatatttaattgctatctgaaatctgatttttaactggaaaccttcttactggatcg |
3300546 |
T |
|
| Q |
103 |
gtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtacttcagttatcatgcggta |
202 |
Q |
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|| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300547 |
gtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttgtataattactttgatcgaacaaagtacttcagttatcatgcggta |
3300646 |
T |
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| Q |
203 |
atactataaacgtatcatccgttatttc----ttttacctttctaagttaactttgccttt |
259 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
3300647 |
atactataaacgtatcatccgttatttaaatattttacttttctaagttaactttgtcttt |
3300707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 36598700 - 36598754
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36598700 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatatatttaattg |
36598754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 38837114 - 38837365
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattgctatctgaaatctgatttttaactggaaaccttcttactggatcg |
102 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38837114 |
taaagcagcgttataccaaattatgtacatgaggatcatgatatat-----attgctatctgaaatctgatttttaactggaaaccttcttactggatcg |
38837208 |
T |
|
| Q |
103 |
gtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtacttcagttatcatgcggta |
202 |
Q |
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|| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38837209 |
gtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttatataattactttgatcgaacaaagtacttcagttatcatgcggta |
38837308 |
T |
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| Q |
203 |
atactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
259 |
Q |
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||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
38837309 |
atactgtaaacgtatcatccgttatttattttacttttctaagttaactttgtcttt |
38837365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 259
Target Start/End: Complemental strand, 31255198 - 31255010
Alignment:
| Q |
71 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttg |
170 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255198 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacatcgacgtgtaagttattgttctaatactacttgtatgattactttg |
31255099 |
T |
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| Q |
171 |
atcgaacaaagtacttcagttatcatgcggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
259 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255098 |
atcgaacaaagtacttcagttatcatgtggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
31255010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 31292181 - 31292099
Alignment:
| Q |
71 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatacta |
153 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
31292181 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacgttgacgtgtaagttatttttctactacta |
31292099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 31419470 - 31419563
Alignment:
| Q |
71 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
164 |
Q |
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|||||||||| ||||||||||| |||||| | |||||| |||||| ||||||| | ||||| |||||| ||||||||||||| | |||||| |
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| T |
31419470 |
gatttttaaccggaaaccttctgactggaccagtgccttcttggagaaagaacgtgagcgtgtgagttatctttctaatactactagcatgatt |
31419563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 31374355 - 31374262
Alignment:
| Q |
71 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
164 |
Q |
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||||||||||||||||| || |||||| ||||||| | |||| |||||||||| |||||||||||| ||| ||||||| || ||||||| |
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| T |
31374355 |
gatttttaactggaaacaacctcactggactggtgccttcatggagaaagaacatttacgtgtaagttacctttcaaatactaattatatgatt |
31374262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 25186 - 25240
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
57 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25186 |
taaagcagcgttatactagattatgtgcatgaggatcatgatatatatttaattg |
25240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 8650738 - 8650786
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatt |
51 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8650738 |
taaagcagcgttgtaccagattatgtgcatgaggatcatgatatatatt |
8650786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 246700 - 246754
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
57 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| |
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|
| T |
246700 |
taaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
246754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 37281498 - 37281444
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatatctatttaattg |
57 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| |
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|
| T |
37281498 |
taaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
37281444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 708 - 751
Alignment:
| Q |
3 |
taaagcagcgttataccagattatgtgcatgaggatcatgatat |
46 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||| |
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|
| T |
708 |
taaagcagcgttataccaaattatgtgcataaggatcataatat |
751 |
T |
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