View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_74 (Length: 270)

Name: NF13040_low_74
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_74
NF13040_low_74
[»] chr4 (2 HSPs)
chr4 (9-189)||(34306463-34306643)
chr4 (190-249)||(25645085-25645144)
[»] chr1 (5 HSPs)
chr1 (187-249)||(26442335-26442397)
chr1 (188-249)||(16265790-16265851)
chr1 (190-245)||(16266868-16266923)
chr1 (190-249)||(24983089-24983148)
chr1 (212-248)||(43680795-43680831)
[»] chr6 (1 HSPs)
chr6 (190-249)||(25163899-25163958)
[»] chr5 (5 HSPs)
chr5 (190-249)||(970847-970906)
chr5 (190-249)||(4299314-4299373)
chr5 (190-249)||(22613219-22613278)
chr5 (189-248)||(39408235-39408294)
chr5 (189-249)||(39406496-39406556)
[»] chr3 (3 HSPs)
chr3 (190-249)||(32950609-32950668)
chr3 (190-249)||(17055050-17055109)
chr3 (195-248)||(4237987-4238040)
[»] chr7 (3 HSPs)
chr7 (193-249)||(43082680-43082736)
chr7 (193-245)||(10463594-10463646)
chr7 (189-245)||(36644466-36644522)
[»] chr8 (3 HSPs)
chr8 (190-249)||(18809999-18810058)
chr8 (190-245)||(11856461-11856516)
chr8 (210-249)||(31126695-31126734)
[»] chr2 (1 HSPs)
chr2 (191-249)||(25945334-25945392)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 34306463 - 34306643
Alignment:
Q  9 agcagagatgaactgtggtattgattgatttcatttcatgccacactagcaatgcaggtttataattaacttatgcctctgcatgtggggtatactatag 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34306463 agcagacatgaactgtggtattgattgatttcatttcatgccacactagcaatgcaggtttataattaacttatgcctctgcatgtggggtatactatag 34306562  T
Q  109 gtagtacatgtacaattttacacccctccatccaatgctgtccttgccattgcttgaattgaacaaacctactaatactat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34306563 gtagtacatgtacaattttacacccctccatccaatgctgtccttgccattgcttgaattgaacaaacctactaatactat 34306643  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 25645144 - 25645085
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25645144 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 25645085  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 26442397 - 26442335
Alignment:
Q  187 tatggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442397 tatggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 26442335  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 16265851 - 16265790
Alignment:
Q  188 atggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16265851 atggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 16265790  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 16266923 - 16266868
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcattta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16266923 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcattta 16266868  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 24983148 - 24983089
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24983148 ggcgccgtttgaggtatgcgacccttatgggtcatgaatggtaggacatgcatttacaag 24983089  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 43680831 - 43680795
Alignment:
Q  212 ccttatgggtcatgtatggtaggacatgcatttacaa 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  43680831 ccttatgggtcatgtatggtaggacatgcatttacaa 43680795  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 25163958 - 25163899
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25163958 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 25163899  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 970906 - 970847
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  970906 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 970847  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 4299314 - 4299373
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4299314 ggcgccgtttgaggtaggcgacctttatgggtcatgtatggtaggacatgcatttacaag 4299373  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 22613219 - 22613278
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22613219 ggcgccgtttgaggtaggcgacccttatgagtcatgtatggtaggacatgcatttacaag 22613278  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 39408294 - 39408235
Alignment:
Q  189 tggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39408294 tggcgccgtttgaggtaggcgacccttatgggtcatgtatggtagaacatgcatttacaa 39408235  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 39406556 - 39406496
Alignment:
Q  189 tggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  39406556 tggcgccgtttgatgtaggtgacccttatgggtcatgtatggtaggacatgcatttacaag 39406496  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 32950609 - 32950668
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950609 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 32950668  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 17055109 - 17055050
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17055109 ggcgccatttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 17055050  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 4237987 - 4238040
Alignment:
Q  195 cgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaa 248  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4237987 cgtttaaggaaggcgacccttatgggtcatgtatggtaggacatgcatttacaa 4238040  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 43082736 - 43082680
Alignment:
Q  193 gccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43082736 gccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 43082680  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 10463594 - 10463646
Alignment:
Q  193 gccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcattta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10463594 gccgtttgaggtaggcgacccttatgggtcatgtatggtaggatatgcattta 10463646  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 36644522 - 36644466
Alignment:
Q  189 tggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcattta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  36644522 tggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggaaatgtattta 36644466  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 18810058 - 18809999
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18810058 ggcgccgtttgaggtaggcgaccattatgggtcatgtatggtaggacatgcatttacaag 18809999  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 11856516 - 11856461
Alignment:
Q  190 ggcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcattta 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11856516 ggcgccgtttgaggtaggcaacccttatgggtcatgtatggtaggacatgcattta 11856461  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 31126695 - 31126734
Alignment:
Q  210 acccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31126695 acccttatgggtcatgtatggtaggacatgcatttacaag 31126734  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 25945334 - 25945392
Alignment:
Q  191 gcgccgtttgaggtaggcgacccttatgggtcatgtatggtaggacatgcatttacaag 249  Q
    ||||||||| |||||||||||||||||||||| || |||||  |||| || ||||||||    
T  25945334 gcgccgtttaaggtaggcgacccttatgggtcttgcatggtgcgacaagcttttacaag 25945392  T

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