View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_77 (Length: 264)
Name: NF13040_low_77
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_77 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 46107878 - 46107633
Alignment:
| Q |
15 |
gtgctagggatggcagaacgaacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46107878 |
gtgctagggatggcagaacgaacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggc |
46107779 |
T |
|
| Q |
115 |
ggctgtgcctttaaatcaaaattgatgatgtagccaaaattaagtgagaggaggaaaacctattat--atattcccttaatacttaatgtgagagaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
46107778 |
ggctgtgcctttaaatcaaaattgatgatgtagccaaaattaagtgagaggaggaaaacctattatatatattcccttaatacttaatgtgaaagaaaat |
46107679 |
T |
|
| Q |
213 |
taacaagagaaatcatgtttaatttttggtgttttgtgatgatgtc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46107678 |
taacaagagaaatcatgtttaatttttggtgttttgtgatggtgtc |
46107633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 22539378 - 22539469
Alignment:
| Q |
35 |
aacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggcggctgtgccttt |
126 |
Q |
| |
|
||||||| | || ||||||||||||| || |||| | |||| || | ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22539378 |
aacaacagatggtttccacgtgatgcgggcctttatgaagagagtacaagaatgggactgtcattgtccttacttgtggcggctgtgccttt |
22539469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University