View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_78 (Length: 263)
Name: NF13040_low_78
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23853195 - 23852957
Alignment:
| Q |
1 |
cgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttac |
100 |
Q |
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| T |
23853195 |
cgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttac |
23853096 |
T |
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| Q |
101 |
tatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853095 |
tatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttc |
23852996 |
T |
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| Q |
201 |
ctcttggaaaggaaatgactgttgtaaatggaaaggtat |
239 |
Q |
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| T |
23852995 |
ctcttggaaaggaaatgactgttgtaaatggaaaggtat |
23852957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 23752481 - 23752256
Alignment:
| Q |
14 |
tgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtgg |
113 |
Q |
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| T |
23752481 |
tgcttcattcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtag |
23752382 |
T |
|
| Q |
114 |
ccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaagga |
213 |
Q |
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| T |
23752381 |
ccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaagga |
23752282 |
T |
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| Q |
214 |
aatgactgttgtaaatggaaaggtat |
239 |
Q |
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| T |
23752281 |
aatgaatgttgtaaatggaaaggtat |
23752256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 22619863 - 22619649
Alignment:
| Q |
25 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
124 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
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| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
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| Q |
125 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
224 |
Q |
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|||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| |
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| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
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| Q |
225 |
taaatggaaaggtat |
239 |
Q |
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||||||||||||||| |
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| T |
22619663 |
taaatggaaaggtat |
22619649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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