View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_8 (Length: 697)

Name: NF13040_low_8
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_8
NF13040_low_8
[»] chr4 (8 HSPs)
chr4 (16-672)||(10553730-10554386)
chr4 (16-671)||(10571460-10572115)
chr4 (440-531)||(10460017-10460108)
chr4 (97-206)||(10460318-10460427)
chr4 (163-217)||(6387934-6387988)
chr4 (171-259)||(10481827-10481915)
chr4 (286-347)||(10460183-10460244)
chr4 (31-63)||(6392660-6392692)
[»] chr3 (4 HSPs)
chr3 (16-249)||(25901463-25901696)
chr3 (16-249)||(25915481-25915714)
chr3 (283-340)||(25901718-25901775)
chr3 (283-340)||(25915736-25915793)
[»] chr2 (1 HSPs)
chr2 (98-152)||(25376854-25376908)
[»] chr8 (3 HSPs)
chr8 (97-152)||(21258691-21258746)
chr8 (99-152)||(42846824-42846877)
chr8 (450-494)||(42847130-42847174)


Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Original strand, 10553730 - 10554386
Alignment:
Q  16 tcagttgagagatctagtgaaacaatcacatattgctcaacagtaataccactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 115  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10553730 tcagttgagagatcaagtgaaacaatcccatattgcgcaacactaatattgctaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 10553829  T
Q  116 accagttaattgtaccactcaaatacacaccattgttcttttcatgcttaaaccagtaaagtggaagcacggggaagcattgaatgtttctccatgaatt 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10553830 accagttaattgtaccattcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccatgaatt 10553929  T
Q  216 atccgcaatgttgaatactttcaccacacttgttgcattaccacgctctttatccaaatccacacgaaacgctaccaccttatatgttttacttgaaata 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10553930 atccgccatgttgaatactttcaccacacttgttgcattaccacgctctttatccaaatccacacgaaacgctaccaccttatatgttttacttgaaata 10554029  T
Q  316 tcatacccaaaagagaacttaaaattactagggaaagataatatatttcttctagatttagttcttgtagctgggttccatagatagagccaataatact 415  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10554030 tcatagccaaaagagaacttaaaattactagggaaagataatatatttcttctagatttagttcttgtagctgggttccatagatagagccaataatact 10554129  T
Q  416 cacgaggccaatcattatatccaaagcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaa 515  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10554130 catgaggccaatcattatatccaaagcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaa 10554229  T
Q  516 tcggtagtaaggattgcagcgaagggtagtattctcatatcgtccaagcctttgtggtgatctcaagttgggtctggaaaagtgaaggtgggtatacacg 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10554230 tcggtagtaaggattgcagcgaagggtagtattctcatatcgtccaagcctttgtggtgatctcaagttgggtctggaaaagtgaaggtgggtatacatg 10554329  T
Q  616 ttttggcgcaaaagagaaatggggaatgttatgaccctaaattgttcacaggttctg 672  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  10554330 ttttggagcaaaagagaaatggggaatgttatgacactgaattgttcaaaggttctg 10554386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 16 - 671
Target Start/End: Original strand, 10571460 - 10572115
Alignment:
Q  16 tcagttgagagatctagtgaaacaatcacatattgctcaacagtaataccactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571460 tcagttgagagatcaagtgaaacaatcacatattgctcaacagtaatactactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 10571559  T
Q  116 accagttaattgtaccactcaaatacacaccattgttcttttcatgcttaaaccagtaaagtggaagcacggggaagcattgaatgtttctccatgaatt 215  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  10571560 tccagttaattgtaccactcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccttgaatt 10571659  T
Q  216 atccgcaatgttgaatactttcaccacacttgttgcattaccacgctctttatccaaatccacacgaaacgctaccaccttatatgttttacttgaaata 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10571660 atccgccatgttgaatactttcaccacacttgttgcattaccacgttctttatccaaatccacacgaaatgctaccaccttatatgttttacttgaaata 10571759  T
Q  316 tcatacccaaaagagaacttaaaattactagggaaagataatatatttcttctagatttagttcttgtagctgggttccatagatagagccaataatact 415  Q
    ||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571760 tcatagccaaaagagaacttaaaattactagggaaagataatgaagttcttctagatttagttcttgtagctgggttccatagatagagccaataatact 10571859  T
Q  416 cacgaggccaatcattatatccaaagcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaa 515  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571860 cacgaggccaatcattatatccagagcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaa 10571959  T
Q  516 tcggtagtaaggattgcagcgaagggtagtattctcatatcgtccaagcctttgtggtgatctcaagttgggtctggaaaagtgaaggtgggtatacacg 615  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||    |||||||||||| ||||||||||| ||||||||| |    
T  10571960 tcggtagtaaggattgcagcgaagggtagtattctcatctcgtccaagccattgcggtgaatcaaagttgggtctgaaaaagtgaaggcgggtatacatg 10572059  T
Q  616 ttttggcgcaaaagagaaatggggaatgttatgaccctaaattgttcacaggttct 671  Q
    |||||| | |||||||||||||||||||||||||| || ||||||||| |||||||    
T  10572060 ttttggagtaaaagagaaatggggaatgttatgacactgaattgttcaaaggttct 10572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 440 - 531
Target Start/End: Complemental strand, 10460108 - 10460017
Alignment:
Q  440 agcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaatcggtagtaaggattg 531  Q
    |||| |||| |||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| ||||| ||||| | ||||||||||    
T  10460108 agcaatgaatatcaatcaagcatagcaatccattgcatgaaccaacaacccaccatctttggtaattttcgtcaaatcgatggtaaggattg 10460017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 10460427 - 10460318
Alignment:
Q  97 aagtaatcgcgaagggtcaaccagttaattgtaccactcaaatacacaccattgttcttttcatgcttaaaccagtaaagtggaagcacggggaagcatt 196  Q
    ||||||||| |||||| ||||||| |||| |||||| ||||||||||||| |||||||| ||| | | || ||| ||||||||||  || || || ||||    
T  10460427 aagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgttcttatcacgataaatccaataaagtggaataacaggtaaacatt 10460328  T
Q  197 gaatgtttct 206  Q
    |||| |||||    
T  10460327 gaatatttct 10460318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 6387988 - 6387934
Alignment:
Q  163 ttaaaccagtaaagtggaagcacggggaagcattgaatgtttctccatgaattat 217  Q
    ||||||| | |||||||||||| ||||||||||||||| |||||||| |||||||    
T  6387988 ttaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattat 6387934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 10481915 - 10481827
Alignment:
Q  171 gtaaagtggaagcacggggaagcattgaatgtttctccatgaattatccgcaatgttgaatactttcaccacacttgttgcattaccac 259  Q
    ||||||||||||||| || || |||||||| ||||||||  ||||||||   ||  |||| ||||||||||| ||| ||||||||||||    
T  10481915 gtaaagtggaagcacaggaaaacattgaatatttctccaacaattatccctcatactgaaaactttcaccacgcttcttgcattaccac 10481827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 10460244 - 10460183
Alignment:
Q  286 gctaccaccttatatgttttacttgaaatatcatacccaaaagagaacttaaaattactagg 347  Q
    |||||||||||||| |||| | | ||| ||||||| |||||||  |||||||||||||||||    
T  10460244 gctaccaccttataagtttcagtcgaattatcataaccaaaagcaaacttaaaattactagg 10460183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 6392692 - 6392660
Alignment:
Q  31 agtgaaacaatcacatattgctcaacagtaata 63  Q
    ||||||| |||||||||||||||||||||||||    
T  6392692 agtgaaagaatcacatattgctcaacagtaata 6392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 5e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 25901463 - 25901696
Alignment:
Q  16 tcagttgagagatctagtgaaacaatcacatattgctcaacagtaataccactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 115  Q
    ||||| || ||||| || |||||||||||||||||||||||||||||   |||||||||| ||| ||||||||| ||||||||||||| | |||| | ||    
T  25901463 tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcataatctgaatagaagtaattgtgaagtgcca 25901562  T
Q  116 accagttaattgtaccactcaaatacacaccattgttcttttcatgcttaaaccagtaaagtggaagcacggggaagcattgaatgtttctccatgaatt 215  Q
    |||||||||| ||||||||||| || ||||| | |||||| ||||| | |||||| |||||||||||||| ||||| ||||||||||||||||||||||     
T  25901563 accagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacattgaatgtttctccatgaatc 25901662  T
Q  216 atccgcaatgttgaatactttcaccacacttgtt 249  Q
    |||| | ||| |||  ||||||||||||||||||    
T  25901663 atcctccatgctgagaactttcaccacacttgtt 25901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 25915481 - 25915714
Alignment:
Q  16 tcagttgagagatctagtgaaacaatcacatattgctcaacagtaataccactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtca 115  Q
    ||||| || ||||| || |||||||||||||||||||||||||||||   |||||||||| ||| |||||| |||||||||||||||| |||||| | ||    
T  25915481 tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgcca 25915580  T
Q  116 accagttaattgtaccactcaaatacacaccattgttcttttcatgcttaaaccagtaaagtggaagcacggggaagcattgaatgtttctccatgaatt 215  Q
    |||||||||| ||||||||||| || ||||| | | |||| ||| | | |||||| ||||| |||||||| ||||||||||||||||||||||||||||     
T  25915581 accagttaatagtaccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacagggaagcattgaatgtttctccatgaatc 25915680  T
Q  216 atccgcaatgttgaatactttcaccacacttgtt 249  Q
    |||| | ||| |||  ||||||||||||||||||    
T  25915681 atcccccatgctgagaactttcaccacacttgtt 25915714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 25901718 - 25901775
Alignment:
Q  283 aacgctaccaccttatatgttttacttgaaatatcatacccaaaagagaacttaaaat 340  Q
    |||||||  |||||||| ||||||||  |||||||||| |||||||||||||||||||    
T  25901718 aacgctagtaccttataagttttactcaaaatatcataaccaaaagagaacttaaaat 25901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 25915736 - 25915793
Alignment:
Q  283 aacgctaccaccttatatgttttacttgaaatatcatacccaaaagagaacttaaaat 340  Q
    |||||||  |||||||| ||||||||  || ||||||| |||||||||||||||||||    
T  25915736 aacgctattaccttataagttttactcaaagtatcataaccaaaagagaacttaaaat 25915793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 25376908 - 25376854
Alignment:
Q  98 agtaatcgcgaagggtcaaccagttaattgtaccactcaaatacacaccattgtt 152  Q
    |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  25376908 agtaattgcgaagggccaaccaggtaatagtaccactcaaatacacaccattgtt 25376854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 21258746 - 21258691
Alignment:
Q  97 aagtaatcgcgaagggtcaaccagttaattgtaccactcaaatacacaccattgtt 152  Q
    |||| ||||| || || |||||| ||||| ||||||||||||||||||||||||||    
T  21258746 aagtgatcgcaaacggccaaccaattaatagtaccactcaaatacacaccattgtt 21258691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 42846824 - 42846877
Alignment:
Q  99 gtaatcgcgaagggtcaaccagttaattgtaccactcaaatacacaccattgtt 152  Q
    |||||| ||||||  |||||||||||| |||||||||||||| |||||| ||||    
T  42846824 gtaatcacgaaggaccaaccagttaatagtaccactcaaataaacaccagtgtt 42846877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 42847130 - 42847174
Alignment:
Q  450 atcaatcaagcacaacaatccattgcatgaaccaacaacccacca 494  Q
    ||||||||| || | ||||||||||||||||||| ||||||||||    
T  42847130 atcaatcaaacaaatcaatccattgcatgaaccagcaacccacca 42847174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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