View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_82 (Length: 254)
Name: NF13040_low_82
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_82 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 51874790 - 51874545
Alignment:
| Q |
9 |
gaagaatattcaaaggaacatgaagagtaacagatatggcggaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatg |
108 |
Q |
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| T |
51874790 |
gaagaaaattcaaaggaacatgaagagtaacagatatggctgaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatg |
51874691 |
T |
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| Q |
109 |
aagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatcttt |
208 |
Q |
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| T |
51874690 |
aagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatcttt |
51874591 |
T |
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| Q |
209 |
ttcatgttaagccataaatatgcaatgggaatggaagtggaaagaa |
254 |
Q |
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| T |
51874590 |
ttcatgttaagccataaatatgcaatgggaatggaagtggaaagaa |
51874545 |
T |
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