View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_83 (Length: 252)
Name: NF13040_low_83
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 30966348 - 30966450
Alignment:
| Q |
136 |
agctaaaaacatattcaagaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgtatttatgtgt |
235 |
Q |
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| T |
30966348 |
agctaaaaacatattcaagaacaaaaccgactaaagttggatgtgtttgcaattttgatacattgaattactattagaacatctttctgtattaatgtgt |
30966447 |
T |
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| Q |
236 |
ata |
238 |
Q |
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||| |
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| T |
30966448 |
ata |
30966450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 30957225 - 30957324
Alignment:
| Q |
146 |
atattcaagaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgtatttatgtgtatattcttcg |
245 |
Q |
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| T |
30957225 |
atattcaagaaccaaaccgactaaacttggatgtgtttgcaattttgatac-ttgaagtactattagaataactttttgtattaatgtgtatattattcg |
30957323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 30936046 - 30936148
Alignment:
| Q |
126 |
taatttgacaagctaaaaacatattcaagaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgt |
225 |
Q |
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| T |
30936046 |
taatttgagtagctaaatacatatttaagaaccaaactgactaaatttggatgtgtttgcaatgttgatacattcaagtacgattagaatatttttgtgt |
30936145 |
T |
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| Q |
226 |
att |
228 |
Q |
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||| |
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| T |
30936146 |
att |
30936148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 30935465 - 30935549
Alignment:
| Q |
2 |
agggtcattgcacatcctctgtgatgcagagttga-ggnnnnnnnggctgattagaatttcaatatttctatgtatgtttacttg |
85 |
Q |
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| T |
30935465 |
agggtcattgcaagtcctctgtgatgcagagttgaaggaaaaaaaggctgattagaatttcaatatttctatgtatgtttacttg |
30935549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 30965621 - 30965662
Alignment:
| Q |
46 |
ggctgattagaatttcaatatttctatgtatgtttacttgtg |
87 |
Q |
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| T |
30965621 |
ggctgattagaattccaatttttctatgtatgtttacttgtg |
30965662 |
T |
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