View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_86 (Length: 251)
Name: NF13040_low_86
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_86 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 41969482 - 41969248
Alignment:
| Q |
14 |
atatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaa |
113 |
Q |
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| T |
41969482 |
atatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaa |
41969383 |
T |
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| Q |
114 |
ctcaacgtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagt |
213 |
Q |
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| T |
41969382 |
ctcaacgtttcttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagt |
41969283 |
T |
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| Q |
214 |
tgtgttgtttcttcttgtacagagcaaggtaaatcgac |
251 |
Q |
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| T |
41969282 |
tg---tgtttcttcttgtacagagcaaggtaaatcgac |
41969248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 1236537 - 1236315
Alignment:
| Q |
22 |
agctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaa-atgctataaatacgtaactcaac- |
119 |
Q |
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| T |
1236537 |
agctaaaggtggctctaggtggatctttcatcactaaaatagagcca-cctttcatagattcagttcatgtagaatttgctataaatacgtaactcaaca |
1236439 |
T |
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| Q |
120 |
--gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtg |
217 |
Q |
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| T |
1236438 |
attcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttg-- |
1236341 |
T |
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| Q |
218 |
ttgtttcttcttgtacagagcaaggta |
244 |
Q |
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| T |
1236340 |
-tgtttcttcttgtacaaagcaaggta |
1236315 |
T |
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