View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_87 (Length: 250)
Name: NF13040_low_87
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 12718505 - 12718393
Alignment:
| Q |
86 |
taactgcaacttggaggtgtactatttgcatcttacgtagaatctgtagatgatttgaacaaaacaattggcccataacgtatcttactccgtccacgtt |
185 |
Q |
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| T |
12718505 |
taactgcaacttggaggtgtgctatttgcatcttacgtagaatctgtagatgatttgaacaaaacaattggcccataacgtatcttactctgtccacgtt |
12718406 |
T |
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| Q |
186 |
gttcaaatgtttg |
198 |
Q |
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| T |
12718405 |
gttcaaatgtttg |
12718393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 12715841 - 12715768
Alignment:
| Q |
15 |
gacacagagctgatcctctaaaagaataatgccacgacgaaacagatttgtcttagaacgcaatctgtgcctaa |
88 |
Q |
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| T |
12715841 |
gacacacagctggtcctctaaaggaataatgccacgacaaaacatatttgtcttagaacgcaatctgtgcctaa |
12715768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 12718373 - 12718340
Alignment:
| Q |
209 |
ctcaaatagagcttcgaattgatgacattcgttg |
242 |
Q |
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| T |
12718373 |
ctcaaatagagcttcgaattgatgacattagttg |
12718340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 26678828 - 26678875
Alignment:
| Q |
38 |
gaataatgccacgacgaaacagatttgtcttagaacgcaatctgtgcc |
85 |
Q |
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| T |
26678828 |
gaataatgcctcgacgaaacagatttgttttagaaggcaatctatgcc |
26678875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 5278286 - 5278239
Alignment:
| Q |
38 |
gaataatgccacgacgaaacagatttgtcttagaacgcaatctgtgcc |
85 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||||||| |||| |
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| T |
5278286 |
gaataatgcctcgacgaaacagatttgttttagaaggcaatctatgcc |
5278239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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