View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13040_low_9 (Length: 696)
Name: NF13040_low_9
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 299 - 675
Target Start/End: Original strand, 38587680 - 38588056
Alignment:
| Q |
299 |
taagtgaccaaacaaatgcatataccaaatacctttctagcgtgattgctactataaatcataacttccaaatctgtccccttgttgcaactttgatgac |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38587680 |
taagtgaccaaacaaatgcatataccaaatacctttctagcgcgattgctactataaatcataacttccaaatctgtccccttgttgcaattttgatgac |
38587779 |
T |
|
| Q |
399 |
aattgccaaaccaactagcggtagctttctatgcaatggatcttagtaacaattccaatcggccaaagaaaccaaatacaaactcaaatacgaacaaatc |
498 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
38587780 |
aattgccaaaccaactagca-tagctttctatgcaatggatcttagtaacaattccaattggccaaagaaacaaaatacaacctcaaatacgaacaaatc |
38587878 |
T |
|
| Q |
499 |
aatgacggaaggcataaaattatttcttcaatcgagtactttcaaacaacaagagaaggaacgacnnnnnnnctccaaaagaccaattctagaaactaaa |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38587879 |
aatgacggaaggcataaaattatttcttcaatcgagtactttcaaacaacaagagaaggaacgacaaaaaaactccaaaagaccaattctagaaactaaa |
38587978 |
T |
|
| Q |
599 |
ccaaatcaaacacccaacattcccaa-cnnnnnnnnnngggaactcaactacggaagccacgaatcgttcaaggcgga |
675 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38587979 |
ccaaatcaaacacccaacattcccaaccttttttttttgcgaactcaactacggaagccacgaatcgttcaaggcgga |
38588056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 84 - 301
Target Start/End: Original strand, 38584688 - 38584905
Alignment:
| Q |
84 |
gagaggagtcaaccgacaaaaagtctaatagcacacacataaccaattcagtcacacagctaacccacaattcgaacgccaaatcagagaagcacaataa |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
38584688 |
gagaggagtcaaccgacaaaaaatctaatagcacacacataaccaattcagtcacacagctaacccacaattcgaacaccaaatcaaagaagcacaataa |
38584787 |
T |
|
| Q |
184 |
cattagaagtgaccaagcaaatcataatcaactccataattgcaccgagaatagtatcaaacaccacaccacgtcgtatcaacaaaatcccaaactcatt |
283 |
Q |
| |
|
||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38584788 |
cataagaagtgaccaagaaaatcagaatcaactccataattgcaccgagaatagtatcaaacaccacaccacgtcgtatcaacaaaatctcaaactcatt |
38584887 |
T |
|
| Q |
284 |
actacgtactattattaa |
301 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38584888 |
actacgtactattattaa |
38584905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 235 - 625
Target Start/End: Complemental strand, 21813116 - 21812730
Alignment:
| Q |
235 |
tagtatcaaacaccacaccacgtcgtatcaacaaaatcccaaactcattactacgtactattattaagtgaccaaacaaatgcatataccaaataccttt |
334 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||| |||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
21813116 |
tagtatcaaacaccacacagcgtcaaatca-caaaattccaaactcattactac----tattctcatgtgaccaaacaaatgcatataccaaataccttt |
21813022 |
T |
|
| Q |
335 |
ctagcgtgattgctactataaatcataacttccaaatctgtccccttgttgcaactttgatgacaattgccaaaccaactagcggtagctttctatgcaa |
434 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| |||||| |||| |||||| | || |
|
|
| T |
21813021 |
ctaacgtgattgctattataaatcataacttccaaatatgtccccttattgcaattttgatgacaaatgccaaactaactagatgtagatttctacgtaa |
21812922 |
T |
|
| Q |
435 |
tggatcttagt-aacaattccaatcggccaaagaaaccaaatacaaactcaaatacgaacaaatcaatgacggaaggcataaaattatttcttcaatcga |
533 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | ||||||||| |||||| ||||| || |||||||||||||| |||||| |||||||||| || |
|
|
| T |
21812921 |
tggatcttagtaaacaattccaattggccaaa-taggcaaatacaacctcaaacacgaatggattaatgacggaaggcacaaaattctttcttcaattga |
21812823 |
T |
|
| Q |
534 |
gtactttcaaacaacaagagaaggaacga-cnnnnnnnctccaaaagaccaattctagaaactaaaccaaatcaaacacccaacattcccaac |
625 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21812822 |
gtactttcaaacaacaagagaaggaacgataaaaaaaactccaaaagaccaattctagaaactaaaccaaatcaaacacgcaacattcccaac |
21812730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 21813474 - 21813321
Alignment:
| Q |
88 |
ggagtcaaccgacaaaaagtctaatagcacacacataaccaattcagtcacacagctaacccacaattcgaacgccaaatcag---agaagcacaataac |
184 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| | || ||||||||||||||| |||||||||| ||| || ||||||||| |||| |||| |||| |
|
|
| T |
21813474 |
ggagtcaaccaacaagaaatctaacagcacacatacaatcaattcagtcacacaactaacccacatttcaaatgccaaatcaacatagaaccacactaac |
21813375 |
T |
|
| Q |
185 |
attagaagtgaccaagcaaatcataatcaactccataattgcaccgagaatagt |
238 |
Q |
| |
|
|| || |||||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
21813374 |
ataagcagtgaccaagaaaatcataatcaattccataattgcatcgagaatagt |
21813321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University