View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_90 (Length: 243)
Name: NF13040_low_90
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_90 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 23485150 - 23484914
Alignment:
| Q |
19 |
aataatgcatctgtttctctatatataaggtcttcttcatcaatgcacaaaaattaagaaatgctgtttttatatttaatttgtaaacaatatatattct |
118 |
Q |
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| T |
23485150 |
aataatgcatctgtttctctatatataaggtcttcttcatcaatgcacaaaaattaagaaatgctgtttttatatttaatttgtaaacaatatatattct |
23485051 |
T |
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| Q |
119 |
cattgtacaattatccataacttattaaggtaatagataaaactcttt----------aattaataagaaacattttt-taataaaataaaaggttatta |
207 |
Q |
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| T |
23485050 |
cattgtacaattatccataaattattaaggtaatagataaaactctttaattctctttaattaataagaaacatttttgtaataaaataaaaggttatta |
23484951 |
T |
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| Q |
208 |
gtgtttta-cccctataatataggtcatctctgattt |
243 |
Q |
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| T |
23484950 |
gtgttttatctcctgtaatataggtcatctctgattt |
23484914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 20159032 - 20158988
Alignment:
| Q |
190 |
taaaataaaaggttattagtgttttacccctataatataggtcat |
234 |
Q |
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| T |
20159032 |
taaaataaagggttaatagtgttttacccctgtaatataggtcat |
20158988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 14429205 - 14429240
Alignment:
| Q |
198 |
aaggttattagtgttttacccctataatataggtca |
233 |
Q |
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| T |
14429205 |
aaggttaatagtgttttacccctataatataggtca |
14429240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 25024921 - 25024869
Alignment:
| Q |
191 |
aaaataaaaggttattagtgttttacccctataatataggtcatctctgattt |
243 |
Q |
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|||| ||||||||| ||||||||||||| | ||||||||||||| || ||||| |
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| T |
25024921 |
aaaaaaaaaggttaatagtgttttacccttgtaatataggtcatttccgattt |
25024869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 36374148 - 36374182
Alignment:
| Q |
200 |
ggttattagtgttttacccctataatataggtcat |
234 |
Q |
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| T |
36374148 |
ggttaatagtgttttacccctataatataggtcat |
36374182 |
T |
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