View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_93 (Length: 239)
Name: NF13040_low_93
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_93 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 30138121 - 30137902
Alignment:
| Q |
20 |
ggtgttttacatgtcgttacagctattaacagaacaactgtttcttcagtttctttgattaacaagtccatgttttacccttgttctctacttaaacatc |
119 |
Q |
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| T |
30138121 |
ggtgttttacatgtcgttacagctattaacagaacaactgtttcttcagtttctttgattaacaaatccatgttttacccttgttctctactcaaacatc |
30138022 |
T |
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| Q |
120 |
caaaagcaattggaggactttttggggttttcctctcatcatttaccacaatgtgtattttcattggtggtgtgcttttcatagttggtaacctttgcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30138021 |
caaaagcaattggaggactttttggggttttcctctcatcatttaccacaatgtgtattttcattggtggtgtgcttttcatagttggtaacctttgcat |
30137922 |
T |
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| Q |
220 |
taggccaccacacttgcttt |
239 |
Q |
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|||||||||||||||||||| |
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| T |
30137921 |
taggccaccacacttgcttt |
30137902 |
T |
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