View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13040_low_94 (Length: 237)

Name: NF13040_low_94
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13040_low_94
NF13040_low_94
[»] chr3 (1 HSPs)
chr3 (16-188)||(52627566-52627741)
[»] chr8 (2 HSPs)
chr8 (188-237)||(1770497-1770546)
chr8 (188-237)||(27519220-27519269)
[»] chr7 (2 HSPs)
chr7 (188-237)||(5654253-5654302)
chr7 (188-237)||(31219389-31219438)
[»] chr6 (2 HSPs)
chr6 (188-237)||(33603647-33603696)
chr6 (188-237)||(17008316-17008369)
[»] chr2 (2 HSPs)
chr2 (188-237)||(202288-202337)
chr2 (188-237)||(5279198-5279247)
[»] chr1 (2 HSPs)
chr1 (188-237)||(29426653-29426702)
chr1 (188-237)||(2534780-2534829)
[»] chr5 (1 HSPs)
chr5 (188-237)||(4574861-4574910)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 52627566 - 52627741
Alignment:
Q  16 ttattagggtccataatttagaagaatcaggcatgcnnnnnnnncaatgataggttacttgttattttgatttttcgatggaaggggttgaaaacacctt 115  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52627566 ttattagggtccataatttagaagaatcaggcatgctttttt--caatgataggttacttgttattttgatttttcgatggaaggggttgaaaacacctt 52627663  T
Q  116 atcactc-----gtatggttaataaccaaaatattgacggcggatttccaacgttaacttattcgaaatatgatatgg 188  Q
    |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52627664 atcactcgtatggtatggttaataaccaaaatattgacggcggatttccaacgttaacttattcggaatatgatatgg 52627741  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 1770546 - 1770497
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1770546 gtgtgtgtttgggaaggcttttgaaagctagaaaccactttccaatgcac 1770497  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 27519269 - 27519220
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27519269 gtgtgtgtttgggaaggcttttggaagctagaaaccacttcccaatgcac 27519220  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 5654253 - 5654302
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5654253 gtgtgtgtttgggaaggcttttggaagctagaaaccacttcccaatgcac 5654302  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 31219438 - 31219389
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31219438 gtgtgtgtttgggaaggcttttggaagctagaaaccacttcccaatgcac 31219389  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 33603647 - 33603696
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33603647 gtgtgtgtttgggaaggcttttggaagctagaaatcactttccaatgcac 33603696  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 17008316 - 17008369
Alignment:
Q  188 gtgtgtgtttgggaaggcttttgga----agctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  17008316 gtgtgtgtttgggaaggcttttggaagctagctagaaaccactttccaatgcac 17008369  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 202288 - 202337
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  202288 gtgtgtgtttgggaaggcttttggaacctagaaaccactttccaatgcac 202337  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 5279198 - 5279247
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||| |||||| || |||||||||    
T  5279198 gtgtgtgtttgggaaggcttttggaagctaaaaaccatttcccaatgcac 5279247  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 29426653 - 29426702
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29426653 gtgtgtgtttgggaaggcttttggaagctaaaaaccactttccaatgcac 29426702  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 2534829 - 2534780
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2534829 gtgtgtgtttgggaaggcttttggaagctataaaccacttcccaatgcac 2534780  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 4574910 - 4574861
Alignment:
Q  188 gtgtgtgtttgggaaggcttttggaagctagaaaccactttccaatgcac 237  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4574910 gtgtgtgtttgagaaggcttttggaagctagaaacaactttccaatgcac 4574861  T

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