View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_96 (Length: 228)
Name: NF13040_low_96
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_96 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 33692857 - 33693060
Alignment:
| Q |
9 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33692857 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
33692956 |
T |
|
| Q |
109 |
tgttgtggaatttaatgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
208 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33692957 |
tgttgtggaatttaatgaacgcggggctgttgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
33693056 |
T |
|
| Q |
209 |
gttg |
212 |
Q |
| |
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|||| |
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| T |
33693057 |
gttg |
33693060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 33674454 - 33674643
Alignment:
| Q |
23 |
agcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttttgttgtggaattta |
122 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
33674454 |
agcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggcagctatggcggtggtttttatttttgttgtggaattta |
33674553 |
T |
|
| Q |
123 |
atgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagtgttg |
212 |
Q |
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| T |
33674554 |
atgacggcagggttgttgctgcagctgaactcgtagtcgtggggtgagacgaaggaggaagacgagtggtggcggagagtgagagtgttg |
33674643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 33663840 - 33664043
Alignment:
| Q |
9 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
108 |
Q |
| |
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|||||||| ||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||| || |||| | ||| ||||||| |
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| T |
33663840 |
gaagaaaaagaagaagaatcaacatcattaagaatttctagaaccttttgaatggtggaaacatcgttgtggtggcggccgcggtgatagttattatttt |
33663939 |
T |
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| Q |
109 |
tgttgtggaatttaatgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
208 |
Q |
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||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |
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| T |
33663940 |
tgttgtggaatttaatggcggcggggctgttgctgcagctgaactcgtagtcgtggggagagacgaaggaggcagtcgagtggtggcggagagctagagt |
33664039 |
T |
|
| Q |
209 |
gttg |
212 |
Q |
| |
|
|||| |
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|
| T |
33664040 |
gttg |
33664043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 33685630 - 33685833
Alignment:
| Q |
9 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
108 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| || |||| | ||| ||||||| |
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| T |
33685630 |
gaagaaaaagaagaaacatcaatatcattgaggatttctagaaccttttgaatggttgaaacatcgttgtggtggcggccgcggtgatagttattatttt |
33685729 |
T |
|
| Q |
109 |
tgttgtggaatttaatgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
208 |
Q |
| |
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|| |||||||||||||| | | |||||||| ||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |
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| T |
33685730 |
tgctgtggaatttaatggcagtggggctgttgctgcagctgaactcgtagtcgtggggagagacgaaggaggcagtcgagtggtggcggagagctagagt |
33685829 |
T |
|
| Q |
209 |
gttg |
212 |
Q |
| |
|
|||| |
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| T |
33685830 |
gttg |
33685833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 86921 - 86718
Alignment:
| Q |
9 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
108 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
86921 |
gaagaaaaaaaagaagcatcaacttcattaaggatttctagaaccttttgaatggtggaaacatcgttgtggtggcggccatgatggtggtttttatttt |
86822 |
T |
|
| Q |
109 |
tgttgtggaatttaatgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
208 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
86821 |
tgttatggaatttaatgacggcggggctgttgctgcagctgaactcgtagtcgttgggagagacgaaggaggcggacgagtggtggcggagagctagagt |
86722 |
T |
|
| Q |
209 |
gttg |
212 |
Q |
| |
|
|||| |
|
|
| T |
86721 |
gttg |
86718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 103590 - 103387
Alignment:
| Q |
9 |
gaagaaaatgaagaagcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggcgaccatggtggtggtttttatttt |
108 |
Q |
| |
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||||| || |||||||||||||| | |||||| ||||| | |||||||||||||||||||||||| | | |||||| || |||| ||||||||||||| |
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| T |
103590 |
gaagagaaagaagaagcatcaactttattgagaatttctaaaaccttttgaatggtggaaacatcatcgtggtggcagccgcggtgatggtttttatttt |
103491 |
T |
|
| Q |
109 |
tgttgtggaatttaatgaccgcggggctgtcgctgcagctgaactcatagtcgtggggagagacaaaggaggcggacgagtggtggcggagagtgagagt |
208 |
Q |
| |
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|||| ||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| || |||||||||||| ||||||| |
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| T |
103490 |
tgttaaggaatttaatgacggcggggctgttgctgcagctgaactcgtagtcgttgggagagatgaaggaggcgaacaggtggtggcggagggtgagagg |
103391 |
T |
|
| Q |
209 |
gttg |
212 |
Q |
| |
|
|||| |
|
|
| T |
103390 |
gttg |
103387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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