View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13040_low_99 (Length: 216)
Name: NF13040_low_99
Description: NF13040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13040_low_99 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 40578261 - 40578090
Alignment:
| Q |
31 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
130 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
40578261 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctatggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
40578162 |
T |
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| Q |
131 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaat |
202 |
Q |
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| T |
40578161 |
gattaaagtagctagcaatcaaacaactatgaataatagtaaagagactcaatggaaattggatgaataaat |
40578090 |
T |
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Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 19804799 - 19804970
Alignment:
| Q |
31 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
130 |
Q |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
19804799 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
19804898 |
T |
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| Q |
131 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaat |
202 |
Q |
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||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| |||||||||| |
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| T |
19804899 |
gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaat |
19804970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 27775273 - 27775444
Alignment:
| Q |
31 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
130 |
Q |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
27775273 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
27775372 |
T |
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| Q |
131 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaat |
202 |
Q |
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||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| |||||||||| |
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| T |
27775373 |
gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaat |
27775444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 32879332 - 32879422
Alignment:
| Q |
94 |
tgtcttacagcaccagcaatagcacatgaataatatggattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatg |
184 |
Q |
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||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| ||| |||| |
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| T |
32879332 |
tgtcttatggcaccagcaataacacatgaataacaaggattaaagtagctagcaatcaaacaacaatgaataacagtaaagaaacttaatg |
32879422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 19312466 - 19312563
Alignment:
| Q |
31 |
aaaggcaatgaattgacacgacaatgaaaactaaatc---aaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataa |
126 |
Q |
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|||||||||||||||||||| ||| |||||||||||| | ||||| || |||| ||||||||| |||||||| |||||||||| | | ||||||||| |
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| T |
19312466 |
aaaggcaatgaattgacacggcaacgaaaactaaatcattataaagccaa-ggattaaaagcaatatgtcttacggcaccagcaacaactcatgaataa |
19312563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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