View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13041_high_8 (Length: 241)
Name: NF13041_high_8
Description: NF13041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13041_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 43232274 - 43232488
Alignment:
| Q |
7 |
ataaaccttatgttattannnnnnnattggatcatgctaacaaatgtttttaagatatttttcagtcgaatttcgaattatcagtaccacttttcttggg |
106 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43232274 |
ataaaccttatgttattatttttttattgggtcatgctaacaaatgtttttaagatattttg-agtcgaatttcgaattatcagttccacttttcttggg |
43232372 |
T |
|
| Q |
107 |
aaccataagctcaaaaaagtagaaattttgcattaaaaacaacaatttttaaacattnnnnnnntattgaatataca-ttttttcaccatttctgaagag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
43232373 |
aaccataagctcaaaaaagtagaaattttgcattaaaaacaacaatttttaaatatt-aaaaaatattgaatatacatttttttcactatttctgaagag |
43232471 |
T |
|
| Q |
206 |
aatatttcaattttagc |
222 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43232472 |
aatatttcaattttagc |
43232488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University