View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13041_low_1 (Length: 466)
Name: NF13041_low_1
Description: NF13041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13041_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 6627068 - 6627282
Alignment:
| Q |
42 |
ttgaatgtaattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctgtgcaatttgacatgtaattacatgactgtt- |
140 |
Q |
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| T |
6627068 |
ttgaatataattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctctgcaatttgacatgtaattacatgactgttt |
6627167 |
T |
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| Q |
141 |
----ttgctccgtgcaatgtaaaaagagacatgttagttttccattgagtacatgcacataaaatagtgtatcaaatatccctgcaacttaatttttatc |
236 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6627168 |
tgttttgctccgtgcaatgtaaaaagagacatgttaggtttccattgagtacatgcacataaaatagtgtatcaaatatccctgcaacttaatttttatc |
6627267 |
T |
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| Q |
237 |
atataaattgctctt |
251 |
Q |
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|| |||||||||||| |
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| T |
6627268 |
atgtaaattgctctt |
6627282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 6634867 - 6635081
Alignment:
| Q |
42 |
ttgaatgtaattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctgtgcaatttgacatgtaattacatgactgtt- |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6634867 |
ttgaatataattacagagattcaaaactaagtgtaattacagtatcattcatgtattgaaatttatctctgcaatttgacatgtaattacatgactgttt |
6634966 |
T |
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| Q |
141 |
----ttgctccgtgcaatgtaaaaagagacatgttagttttccattgagtacatgcacataaaatagtgtatcaaatatccctgcaacttaatttttatc |
236 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6634967 |
tgttttgctccgtgcaatgtaaaaagagacatgttaggtttccattgagtacatgcacataaaatagtgtatcaaatatccctgcaacttaatttttatc |
6635066 |
T |
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| Q |
237 |
atataaattgctctt |
251 |
Q |
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|| |||||||||||| |
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| T |
6635067 |
atgtaaattgctctt |
6635081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 6626550 - 6626584
Alignment:
| Q |
11 |
agaacctgtgacactctctcggttttaaccgttga |
45 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
6626550 |
agaaccggtgacactctctcggttttaaccgttga |
6626584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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