View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13041_low_4 (Length: 363)
Name: NF13041_low_4
Description: NF13041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13041_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 47838133 - 47837799
Alignment:
| Q |
10 |
acatcatcatttatacaacaaagggtgtataatttacaataggaatttgtcatttatcatcttggaacatgaatacttcacctgagctgggactgccttt |
109 |
Q |
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| T |
47838133 |
acatcataatttatacaacaaagggtgtataatttacaataggaatttgtcatttatcatcttggaacatgaatacttcacctgagctgggactgccttt |
47838034 |
T |
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| Q |
110 |
gccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgacaaaaaacacattccaaatggtga |
209 |
Q |
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| T |
47838033 |
gccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgacaaaaaacacattccaaatggtga |
47837934 |
T |
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| Q |
210 |
aatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatcatcactggtccaacaccaattaa |
309 |
Q |
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| T |
47837933 |
aatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatcatcactggtccaacaccaattaa |
47837834 |
T |
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| Q |
310 |
aaataaaaccaaaatcgcacttggcaagtaaccag |
344 |
Q |
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| T |
47837833 |
aaataaaaccaaaatcgcacttggcaagtaaccag |
47837799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 345
Target Start/End: Original strand, 4705571 - 4705828
Alignment:
| Q |
88 |
cacctgagctgggactgcctttgccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgaca |
187 |
Q |
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| T |
4705571 |
cacctgagctggcactgcctttgcaagtgttgcaggcagctcttttaagctagaaaagactgaaagttgacttataagagaaccagttaaaacattaata |
4705670 |
T |
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| Q |
188 |
aaaaacacattccaaatggtgaaatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatca |
287 |
Q |
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|||||||||||||| || ||||| |||| |||||| || ||||||||||||||| | || || |||||||| || || ||||||| ||||| || ||||| |
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| T |
4705671 |
aaaaacacattccagattgtgaagtacaaaactttccaacatgcacttttcttccttccactgcgggaaataggaccctcaactgttgaaaatagcatca |
4705770 |
T |
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| Q |
288 |
tcactggtccaacaccaattaaaaataaaaccaaaatcgcacttggcaagtaaccagt |
345 |
Q |
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||| |||| |||| | |||||||||||||| ||| ||||||| | ||||||||| |
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| T |
4705771 |
tcaatggtggaacaaaacacaaaaataaaaccaatatcacacttggtaggtaaccagt |
4705828 |
T |
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