View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13041_low_7 (Length: 261)
Name: NF13041_low_7
Description: NF13041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13041_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 24949777 - 24950010
Alignment:
| Q |
17 |
actaactaattacatgatacttcattattttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagtgaaaaatgaaattta |
116 |
Q |
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| T |
24949777 |
actaactaattacatgatacttcattactttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagagaaaaatgaaattta |
24949876 |
T |
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| Q |
117 |
aaatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgt |
216 |
Q |
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| T |
24949877 |
aaatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgt |
24949976 |
T |
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| Q |
217 |
aagtgttaaagtcattgtaagttgacttgtctgt |
250 |
Q |
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| T |
24949977 |
aagtgttaaagtcattgtaagttgacttgtctgt |
24950010 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 3000660 - 3000595
Alignment:
| Q |
146 |
aagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagact |
213 |
Q |
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|||| |||||| |||||||||||| ||| ||| || ||||| |||||||||||||||||||||||| |
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| T |
3000660 |
aagagctcatcgttgagctagaccggaaagatgaacaccgag--ctaagggcgaaatagcccgagact |
3000595 |
T |
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