View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_17 (Length: 258)
Name: NF13042_high_17
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 8762750 - 8762519
Alignment:
| Q |
11 |
cagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaaaaaagaacaaacaaacttcttgcgccaacacttc |
110 |
Q |
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| T |
8762750 |
cagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaaaaaagaacaaacaaacttcttgcgccaacacttc |
8762651 |
T |
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| Q |
111 |
aatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgttgaccaattcccttacat |
210 |
Q |
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| T |
8762650 |
aatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgttgaccaattcccttacat |
8762551 |
T |
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| Q |
211 |
acaaaaagggttggctcttcaagatttggaac |
242 |
Q |
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| T |
8762550 |
acaaaaagggttggctcttcaagatttggaac |
8762519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 8789137 - 8789054
Alignment:
| Q |
110 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgtt |
193 |
Q |
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| T |
8789137 |
caatgtttgcatacactggcatatcaaacaagaggtacaaacaatgtttttaaccattttaaccaatttccaacacatcatgtt |
8789054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8789230 - 8789175
Alignment:
| Q |
14 |
agagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaat |
69 |
Q |
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| T |
8789230 |
agagctctaacatcaatgtttgcatcaggtctatcgagttctgtgatcagagaaat |
8789175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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