View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_18 (Length: 253)
Name: NF13042_high_18
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 41446987 - 41447213
Alignment:
| Q |
11 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaa |
110 |
Q |
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| T |
41446987 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattctattccttcaa |
41447086 |
T |
|
| Q |
111 |
gttcaatggaaaaaatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaaatata |
210 |
Q |
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| T |
41447087 |
gttcaatggaaaaaatccttgaacaagaacatactgttttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaagaaaaatata |
41447186 |
T |
|
| Q |
211 |
atatcataaaattacttgttgtcgctg |
237 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
41447187 |
atatcataaaatcacttgttgtcgctg |
41447213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 41457169 - 41457383
Alignment:
| Q |
11 |
cagagagcatgcaacatagcatcctgggacaatg-----tcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattcc |
105 |
Q |
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| T |
41457169 |
cagagagcacgcaacatagcatcttgggacaatgtaatgtcatggagaaatctgcagttttgcatattgatccttcccttgtatcatctaattctattcc |
41457268 |
T |
|
| Q |
106 |
ttcaagttcaatggaaaaaatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaa |
205 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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| T |
41457269 |
ttcaagttcaatgggaaacatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccggttaatcaaagaaatcacagttgttgaagaaaa |
41457368 |
T |
|
| Q |
206 |
atataatatcataaa |
220 |
Q |
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||||||||| ||||| |
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| T |
41457369 |
atataatataataaa |
41457383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 37456220 - 37456113
Alignment:
| Q |
11 |
cagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaa |
110 |
Q |
| |
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||||||||| | |||||| |||||||||||||||||||| |||||| ||| | ||||| ||||||||| ||||||||| |||| |||| |||| |
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| T |
37456220 |
cagagagcactcgacatagggtcctgggacaatgtcatggataaatcttcaggaacgcataccgatccttcccctgtatcatcctattcttttccatcaa |
37456121 |
T |
|
| Q |
111 |
gttcaatg |
118 |
Q |
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| T |
37456120 |
gttcaatg |
37456113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 18979651 - 18979609
Alignment:
| Q |
172 |
gattaatcaaggaaatcacagttgttgaacaaaaatataatat |
214 |
Q |
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| T |
18979651 |
gattaatcaaggaaatcacacttgttgatgaaaaatataatat |
18979609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 16238587 - 16238627
Alignment:
| Q |
22 |
caacatagcatcctgggacaatgtcatggagaaatctgcag |
62 |
Q |
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| T |
16238587 |
caacatagccttctgggacaatgtcatggagaaatatgcag |
16238627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 18988114 - 18988074
Alignment:
| Q |
172 |
gattaatcaaggaaatcacagttgttgaacaaaaatataat |
212 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |
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| T |
18988114 |
gattaatcaaggaaatcacacttgttgatgaaaaatataat |
18988074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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