View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_20 (Length: 251)
Name: NF13042_high_20
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 9195034 - 9194792
Alignment:
| Q |
1 |
tctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcattgcctttttcgatcccttttgttgccctaattttaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
9195034 |
tctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcatcgcctttttcgattccttttgttgccctaattttaaat |
9194935 |
T |
|
| Q |
101 |
cttcaatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9194934 |
cttcgatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagc |
9194835 |
T |
|
| Q |
201 |
atagaatctatggtttagtttatctctcctttgtctctctgct |
243 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9194834 |
atagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9212996 - 9213238
Alignment:
| Q |
1 |
tctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcattgcctttttcgatcccttttgttgccctaattttaaat |
100 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| | ||||||||||| ||||||||||| || ||| ||||| |
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| T |
9212996 |
tctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgattctaaat |
9213095 |
T |
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| Q |
101 |
cttcaatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9213096 |
cttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatcttaaagc |
9213195 |
T |
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| Q |
201 |
atagaatctatggtttagtttatctctcctttgtctctctgct |
243 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
9213196 |
gtaaaatctatggtttagtttctctctcctttgtctctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
157 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
243 |
Q |
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||||| |||||||| ||||| ||||||||||||| | || |||||||||| | ||||| || || ||||| ||||||||||||||| |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 17371053 - 17370997
Alignment:
| Q |
78 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
134 |
Q |
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|||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| |
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| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatc |
17370997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 24748802 - 24748746
Alignment:
| Q |
78 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
134 |
Q |
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|||||||||| || ||| ||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatc |
24748746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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