View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13042_high_26 (Length: 201)
Name: NF13042_high_26
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13042_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 4665608 - 4665773
Alignment:
| Q |
18 |
caaaagtgtgtgcagatccatctacatatacaaattgggatggaattcacttaacagaagcagcttatagacacattgccaaaggacttattaatggccc |
117 |
Q |
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| T |
4665608 |
caaaagtgtgtgcagatccatctacatatacaaattgggatggaattcacttaacagaagcagcttatagacacattgccaaaggacttattaatggccc |
4665707 |
T |
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| Q |
118 |
tttctctattccaccactcaagcctgcattcatcaagatagcctagcctttcaaatgtagtttttg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4665708 |
tttctctattccaccactcaagcctgcattcatcaagatagcctagcctttcaaatgtagtttttg |
4665773 |
T |
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Target: chr2; HSP #2
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 4668907 - 4669073
Alignment:
| Q |
18 |
caaaagtgtgtgcagatccatctacatatacaaattgggatggaattcacttaacagaagcagcttatagacacattgccaaaggacttattaatggccc |
117 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4668907 |
caaaagtatgtgaagatccatctacatatacaaattgggatggaattcacttaacagaagcagcttatagacacattgccaaaggacttattaacggccc |
4669006 |
T |
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| Q |
118 |
tttctctattccaccactcaagcctgcattcatcaagatagcctagccttt-caaatgtagtttttg |
183 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||| |
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| T |
4669007 |
tttctctattccaccactcaagcctgcattctttaagatagcctagcctttccaaatgtaatttttg |
4669073 |
T |
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