View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13042_high_4 (Length: 439)

Name: NF13042_high_4
Description: NF13042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13042_high_4
NF13042_high_4
[»] chr2 (23 HSPs)
chr2 (6-107)||(31090163-31090264)
chr2 (1-104)||(32764940-32765043)
chr2 (1-105)||(32766257-32766361)
chr2 (1-110)||(17330248-17330357)
chr2 (1-105)||(31091545-31091649)
chr2 (1-105)||(24458061-24458165)
chr2 (1-105)||(2911509-2911613)
chr2 (1-81)||(17466846-17466926)
chr2 (1-105)||(24459464-24459568)
chr2 (1-104)||(2910102-2910205)
chr2 (1-105)||(7073640-7073744)
chr2 (1-108)||(40000352-40000459)
chr2 (1-63)||(14704049-14704111)
chr2 (1-103)||(34037691-34037793)
chr2 (3-105)||(5915012-5915114)
chr2 (1-105)||(39016401-39016503)
chr2 (1-105)||(21733789-21733896)
chr2 (1-55)||(31814362-31814416)
chr2 (4-105)||(39015006-39015107)
chr2 (1-74)||(7412124-7412197)
chr2 (1-54)||(17466093-17466146)
chr2 (1-55)||(26586313-26586367)
chr2 (1-54)||(38985007-38985060)
[»] chr3 (29 HSPs)
chr3 (4-105)||(36278953-36279054)
chr3 (1-104)||(17701937-17702040)
chr3 (1-105)||(2591628-2591732)
chr3 (1-105)||(48572986-48573090)
chr3 (1-105)||(55388074-55388178)
chr3 (1-105)||(2592025-2592129)
chr3 (1-105)||(17700519-17700623)
chr3 (1-105)||(47118069-47118173)
chr3 (1-92)||(48808380-48808471)
chr3 (1-55)||(36280335-36280389)
chr3 (1-74)||(11773069-11773142)
chr3 (4-105)||(52316980-52317081)
chr3 (1-105)||(33428453-33428557)
chr3 (1-105)||(34263806-34263910)
chr3 (1-105)||(45600957-45601060)
chr3 (1-112)||(50753812-50753922)
chr3 (1-94)||(19114545-19114638)
chr3 (1-94)||(20464081-20464174)
chr3 (1-62)||(48574477-48574538)
chr3 (12-105)||(52318346-52318439)
chr3 (11-105)||(53957676-53957769)
chr3 (1-105)||(55389487-55389591)
chr3 (1-110)||(49261555-49261661)
chr3 (1-55)||(3671089-3671143)
chr3 (8-105)||(19115172-19115268)
chr3 (1-105)||(47075369-47075473)
chr3 (1-69)||(53959118-53959186)
chr3 (1-54)||(36827493-36827546)
chr3 (31-87)||(19331127-19331183)
[»] chr1 (21 HSPs)
chr1 (1-110)||(32665788-32665897)
chr1 (1-105)||(9339647-9339751)
chr1 (4-105)||(10332987-10333088)
chr1 (1-105)||(7945572-7945676)
chr1 (1-105)||(10333204-10333308)
chr1 (1-110)||(6612415-6612524)
chr1 (1-69)||(52440577-52440645)
chr1 (1-110)||(5782410-5782519)
chr1 (249-328)||(12163067-12163146)
chr1 (1-105)||(52439480-52439580)
chr1 (1-63)||(9341043-9341105)
chr1 (4-92)||(7944169-7944257)
chr1 (4-55)||(6614000-6614051)
chr1 (4-90)||(44020002-44020088)
chr1 (1-54)||(22856732-22856785)
chr1 (1-105)||(3117650-3117754)
chr1 (1-53)||(5783127-5783179)
chr1 (1-57)||(25037927-25037983)
chr1 (1-57)||(25043139-25043195)
chr1 (1-55)||(50107221-50107275)
chr1 (1-46)||(34088487-34088532)
[»] chr8 (14 HSPs)
chr8 (1-105)||(35177396-35177500)
chr8 (1-105)||(32898463-32898567)
chr8 (1-104)||(1952988-1953090)
chr8 (1-105)||(35178822-35178926)
chr8 (7-105)||(41753999-41754097)
chr8 (1-104)||(5965460-5965563)
chr8 (1-105)||(10407602-10407706)
chr8 (1-87)||(45476181-45476267)
chr8 (1-105)||(41754813-41754916)
chr8 (3-56)||(1951992-1952045)
chr8 (1-105)||(30134567-30134671)
chr8 (1-104)||(5738041-5738144)
chr8 (1-55)||(41121160-41121214)
chr8 (1-57)||(28619563-28619619)
[»] chr5 (25 HSPs)
chr5 (1-105)||(8074452-8074556)
chr5 (1-105)||(4592862-4592966)
chr5 (4-105)||(9538070-9538171)
chr5 (1-105)||(546054-546157)
chr5 (1-105)||(2464670-2464774)
chr5 (1-110)||(28591132-28591241)
chr5 (1-105)||(21069290-21069394)
chr5 (1-105)||(40612677-40612781)
chr5 (6-69)||(544685-544748)
chr5 (1-86)||(25590451-25590535)
chr5 (1-105)||(2466792-2466896)
chr5 (12-104)||(18400192-18400284)
chr5 (1-76)||(32641744-32641819)
chr5 (1-67)||(13483059-13483125)
chr5 (1-79)||(19182977-19183055)
chr5 (1-68)||(19186238-19186305)
chr5 (1-74)||(16611760-16611833)
chr5 (1-57)||(4594118-4594173)
chr5 (1-81)||(8075851-8075931)
chr5 (1-45)||(13483174-13483218)
chr5 (1-36)||(14881017-14881052)
chr5 (1-48)||(18004696-18004743)
chr5 (1-104)||(31947055-31947158)
chr5 (34-104)||(26327123-26327193)
chr5 (1-69)||(32640325-32640393)
[»] chr7 (31 HSPs)
chr7 (1-104)||(43457459-43457562)
chr7 (1-105)||(44334467-44334571)
chr7 (2-105)||(44333140-44333243)
chr7 (1-108)||(46286501-46286608)
chr7 (1-105)||(7258276-7258380)
chr7 (1-89)||(35727716-35727804)
chr7 (1-105)||(48777257-48777361)
chr7 (1-107)||(30925026-30925132)
chr7 (1-105)||(48647461-48647565)
chr7 (1-104)||(48646051-48646154)
chr7 (2-110)||(35729105-35729213)
chr7 (1-105)||(45583685-45583789)
chr7 (1-105)||(48788690-48788794)
chr7 (1-90)||(10899091-10899180)
chr7 (1-53)||(44530629-44530681)
chr7 (4-105)||(42477382-42477482)
chr7 (1-104)||(7259702-7259805)
chr7 (1-104)||(12223717-12223820)
chr7 (6-109)||(34704906-34705009)
chr7 (1-94)||(8374926-8375019)
chr7 (1-55)||(13578338-13578392)
chr7 (4-69)||(8375604-8375669)
chr7 (1-105)||(8048802-8048906)
chr7 (7-63)||(10894393-10894449)
chr7 (1-53)||(45584514-45584566)
chr7 (1-56)||(12220073-12220128)
chr7 (4-55)||(33607644-33607695)
chr7 (1-105)||(19433952-19434056)
chr7 (1-57)||(44529077-44529133)
chr7 (1-46)||(7509489-7509534)
chr7 (1-102)||(39708107-39708208)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-105)||(116056-116160)
[»] chr6 (3 HSPs)
chr6 (1-105)||(30748000-30748104)
chr6 (1-105)||(31218956-31219060)
chr6 (1-104)||(31219178-31219281)
[»] chr4 (18 HSPs)
chr4 (1-105)||(42278050-42278154)
chr4 (1-104)||(47874566-47874669)
chr4 (1-105)||(53771067-53771171)
chr4 (1-105)||(47878502-47878606)
chr4 (1-110)||(31844718-31844827)
chr4 (1-69)||(26172960-26173028)
chr4 (1-114)||(54574417-54574530)
chr4 (2-104)||(53770335-53770437)
chr4 (1-54)||(54574823-54574876)
chr4 (1-105)||(4703235-4703339)
chr4 (5-105)||(19051253-19051353)
chr4 (5-57)||(50694798-50694850)
chr4 (1-46)||(19050298-19050343)
chr4 (19-105)||(44158505-44158591)
chr4 (1-94)||(39868934-39869025)
chr4 (12-56)||(6039171-6039215)
chr4 (1-57)||(21621872-21621928)
chr4 (1-105)||(48740038-48740142)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-103)||(74331-74433)
[»] scaffold0767 (1 HSPs)
scaffold0767 (1-55)||(5650-5704)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 31090264 - 31090163
Alignment:
Q  6 ataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  31090264 ataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatgtgacagcgagctgcagaatcagggactaaattgactatttg 31090165  T
Q  106 tt 107  Q
    ||    
T  31090164 tt 31090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32765043 - 32764940
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||| |||||    
T  32765043 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagacctatatgacaactagctgcagaatcagggactaaagtgact 32764944  T
Q  101 attt 104  Q
    ||||    
T  32764943 attt 32764940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32766257 - 32766361
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||| |||||| |||||||| ||| |||||    
T  32766257 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcagggaccaaagtgact 32766356  T
Q  101 atttg 105  Q
    |||||    
T  32766357 atttg 32766361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17330248 - 17330357
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||  |||||||||||||| ||||||||  ||||    
T  17330248 aagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagtgagctgcagaatcaaggactaaagcgact 17330347  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  17330348 atttgctctt 17330357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31091545 - 31091649
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| | || |||||| |||||||| ||| |||||    
T  31091545 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagggaccaaagtgact 31091644  T
Q  101 atttg 105  Q
    |||||    
T  31091645 atttg 31091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24458165 - 24458061
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||||||  |||||||||| ||||| ||| | ||||||||| |||||||||||||| |||||    
T  24458165 aagtgataacgaaagtgtagagtcagaaacttatttgtatttaattttgagtcagggacctatgtgatagcgagctgcataatcagggactaaagtgact 24458066  T
Q  101 atttg 105  Q
    |||||    
T  24458065 atttg 24458061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2911509 - 2911613
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   ||||||| || | ||| ||||| |||||||||||| ||| ||| ||| |||||    
T  2911509 aagtgataacggaagtgcaaagtcagagacttatttatatttaactttgagtcatggccttatgtgacagcgagctgcagaaccagagaccaaagtgact 2911608  T
Q  101 atttg 105  Q
    |||||    
T  2911609 atttg 2911613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17466846 - 17466926
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcaga 81  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||| ||||| |||| ||||||    
T  17466846 aagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggcttatgtgacagcgaggtgcaga 17466926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24459464 - 24459568
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||||||||| |||||| ||||| ||||| |||| |||||| |||||||| ||| |||||    
T  24459464 aagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtcagggaccaaagtgact 24459563  T
Q  101 atttg 105  Q
     ||||    
T  24459564 ctttg 24459568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2910205 - 2910102
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||| || |||||||||||||||||||||||||| |||||||||| |||||||||  |||| ||||| ||||||||| |||||  ||||||| ||| |    
T  2910205 aagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatctatgtgacagcgagctgcaaaatcaaagactaaagtgatt 2910106  T
Q  101 attt 104  Q
    ||||    
T  2910105 attt 2910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7073744 - 7073640
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| || |||| | |||||  ||||   ||||||||||| | |||||||| |||||    
T  7073744 aagtgataacggaagtgcagaatcagagacttatttgtatttaatcccgaatcagagacctatgcgacagtaagctgcagaatgaaggactaaagtgact 7073645  T
Q  101 atttg 105  Q
    |||||    
T  7073644 atttg 7073640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 40000352 - 40000459
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||| | ||||||  |||| | ||| |||| |||||| |||||||| ||| ||||     
T  40000352 aagtgataacggaagtgcagggttagagacttatttgtatttaatcctcaatcagggatctatgtaacagcgaggtgcagagtcagggaccaaagtgaca 40000451  T
Q  101 atttgttc 108  Q
    ||||||||    
T  40000452 atttgttc 40000459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14704111 - 14704049
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctat 63  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||||    
T  14704111 aagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacctat 14704049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34037691 - 34037793
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||| | || ||| | ||||| | || |||||| ||| |||||||| |||||    
T  34037691 aagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacctttatgacagcaaggtgcagagtcaaggactaaagtgact 34037790  T
Q  101 att 103  Q
    |||    
T  34037791 att 34037793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 5915012 - 5915114
Alignment:
Q  3 gtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactat 102  Q
    ||||||||||||||||||||| || ||||| ||| |||||||| ||||||||  | ||||| ||| | |||| |||||| ||| |||||||| |||||||    
T  5915012 gtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtcaaagacctatttgaaagcgaggtgcagagtcatggactaaagtgactat 5915111  T
Q  103 ttg 105  Q
    |||    
T  5915112 ttg 5915114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 39016401 - 39016503
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtc--aggggcctatctgacaacgagctgcagaatcagggactaaactga 98  Q
    |||||||||||||||||||||||    ||||||||| ||||||||||||||||  || |   ||| ||||| |||||||||||||||| ||||||| |||    
T  39016401 aagtgataacggaagtgcagagt----gacttatttgtatttaatcctgagtcagagagatgtatgtgacagcgagctgcagaatcagagactaaagtga 39016496  T
Q  99 ctatttg 105  Q
    |||||||    
T  39016497 ctatttg 39016503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21733789 - 21733896
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatc---ctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactg 97  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    |||||||||| ||| | |||||||||  | || | |||||||||| | ||    
T  21733789 aagtgatgacggaagtgcagagtcagagacttatttgtatttaatcatgatgagtcagggacctttgtgacaacgatgtacaaagtcagggactagagtg 21733888  T
Q  98 actatttg 105  Q
    ||||||||    
T  21733889 actatttg 21733896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31814362 - 31814416
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||||||||||||||||||||| | |||| |||||||||||| |||||||||    
T  31814362 aagtgataacggaagtgcagagtcaaaaacttctttatatttaattctgagtcag 31814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 39015107 - 39015006
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    |||||| | ||||||||||||| |||| ||||| ||||||||||||||||| ||  |||| || || |||| |||||| |||||||| ||| ||| ||||    
T  39015107 tgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatctatgtggcagcgaggtgcagagtcagggacaaaagtgattatt 39015008  T
Q  104 tg 105  Q
    ||    
T  39015007 tg 39015006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7412197 - 7412124
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgag 74  Q
    |||||||||||||||||||   |||| ||||| ||||||||||||| |||||||| |  |||| ||||||||||    
T  7412197 aagtgataacggaagtgcactatcagtgacttctttatatttaatcttgagtcagagatctatgtgacaacgag 7412124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17466146 - 17466093
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtca 54  Q
    |||||| ||||||||||||||||||||||  | ||| |||||||||||||||||    
T  17466146 aagtgaaaacggaagtgcagagtcagagatatctttgtatttaatcctgagtca 17466093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26586313 - 26586367
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||||||||||||||| | ||| |||||  ||||||||||||| ||||||||    
T  26586313 aagtgataacggaagtgcacattcaaagactactttatatttaatcttgagtcag 26586367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38985007 - 38985060
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtca 54  Q
    |||||||||||||||||||||||||  ||||| ||| |||||||| | ||||||    
T  38985007 aagtgataacggaagtgcagagtcaaggacttctttgtatttaattccgagtca 38985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 36279054 - 36278953
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| | |||||||||||||| ||||||||    
T  36279054 tgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacctatgtgacaacgagctgtataatcagggactaaagtgactatt 36278955  T
Q  104 tg 105  Q
    ||    
T  36278954 tg 36278953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17701937 - 17702040
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||| ||||||| |||||    
T  17701937 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagagactaaagtgact 17702036  T
Q  101 attt 104  Q
    ||||    
T  17702037 attt 17702040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2591732 - 2591628
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||| |||||    
T  2591732 aagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggactaaagtgact 2591633  T
Q  101 atttg 105  Q
    |||||    
T  2591632 atttg 2591628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48573090 - 48572986
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||| |||||| |||||| |||||||| ||| |||||    
T  48573090 aagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtcagggaccaaagtgact 48572991  T
Q  101 atttg 105  Q
    |||||    
T  48572990 atttg 48572986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 55388178 - 55388074
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| |||||    
T  55388178 aagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcagggactaaagtgact 55388079  T
Q  101 atttg 105  Q
    |||||    
T  55388078 atttg 55388074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2592025 - 2592129
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||   ||||||| ||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||| |||||    
T  2592025 aagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattagggactaaagtgact 2592124  T
Q  101 atttg 105  Q
    |||||    
T  2592125 atttg 2592129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17700623 - 17700519
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||| |||||||||| |||||| |||  ||||||| |||||    
T  17700623 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcagagtcaaagactaaagtgact 17700524  T
Q  101 atttg 105  Q
    |||||    
T  17700523 atttg 17700519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47118069 - 47118173
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||| |||||||||||||||||||| |||  ||||||||||||||| ||| | ||| |||||||||| |||||| |||||||||||| ||||     
T  47118069 aagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcggggacttatatgacaacgaggtgcagagtcagggactaaagtgacc 47118168  T
Q  101 atttg 105  Q
    |||||    
T  47118169 atttg 47118173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 48808471 - 48808380
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggacta 92  Q
    |||||| |||||||||||||||| ||  |||||||| |||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||    
T  48808471 aagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagacctatctaacagcgagctgcagaatcagggacta 48808380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36280335 - 36280389
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36280335 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 36280389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11773069 - 11773142
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgag 74  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||    
T  11773069 aagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 52317081 - 52316980
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    |||||||||| ||||||||| | |||||||||| ||||||||| |||||||| | ||||| ||||| |||||||||||||||| ||||||| ||| ||||    
T  52317081 tgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacctatatgacagcgagctgcagaatcagagactaaagtgattatt 52316982  T
Q  104 tg 105  Q
    ||    
T  52316981 tg 52316980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33428453 - 33428557
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||| ||||||| ||||||||||  ||||| ||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||||||| ||| ||||     
T  33428453 aagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggacgaaagtgacc 33428552  T
Q  101 atttg 105  Q
    |||||    
T  33428553 atttg 33428557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34263910 - 34263806
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||| || ||| | ||||| |||| |||||| |||||| | ||| |||||    
T  34263910 aagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacctctgtgacagcgaggtgcagagtcaggggccaaagtgact 34263811  T
Q  101 atttg 105  Q
    |||||    
T  34263810 atttg 34263806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45600957 - 45601060
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||||| ||||| ||||   |||| |||||||||||| ||||     
T  45600957 aagtgataacggaagtgcagagtcag-gacttctttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaagtgacg 45601055  T
Q  101 atttg 105  Q
    |||||    
T  45601056 atttg 45601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 50753922 - 50753812
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| |||||| ||||||||| |||| ||||||||||||||||| | |||| ||||| ||||| |||| ||||||   |||||||||| |||||    
T  50753922 aagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacctatgtgacagcgaggtgcagagctagggactaaagtgact 50753823  T
Q  101 atttgttcttat 112  Q
    | ||||||||||    
T  50753822 a-ttgttcttat 50753812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19114638 - 19114545
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaa 94  Q
    ||||||||||||||||||| ||| || ||||| ||| ||||||||| |||||||||| ||| | |||||||||  |||||| ||||||||||||    
T  19114638 aagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaa 19114545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 20464174 - 20464081
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaa 94  Q
    |||||||||| ||||||||||||||| ||||| ||| ||||||||| |||| ||||| ||| | |||||||||| |||||| || |||||||||    
T  20464174 aagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacctttgtgacaacgaggtgcagagtcggggactaaa 20464081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48574477 - 48574538
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggccta 62  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  48574477 aagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcagggaccta 48574538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 52318346 - 52318439
Alignment:
Q  12 gaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||  |||| ||||| |||  |||||| |||| ||| ||| ||||||||||    
T  52318346 gaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagaccaaagtgactatttg 52318439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 53957769 - 53957676
Alignment:
Q  11 ggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    ||||||||||||||| |||||||||| |||||| ||||||||||||  ||||| | ||| |||| |||||||||| | |||||| ||||||||||    
T  53957769 ggaagtgcagagtcatagacttatttgtattta-tcctgagtcaggaacctatgtaacagcgagttgcagaatcaagtactaaagtgactatttg 53957676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 55389487 - 55389591
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||  |||||||  | ||||| ||||| |||| |||||| | |||||| ||| |||||    
T  55389487 aagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacctatgtgacagcgaggtgcagagttagggaccaaagtgact 55389586  T
Q  101 atttg 105  Q
    |||||    
T  55389587 atttg 55389591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 49261555 - 49261661
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||| |||||||| ||||||||   | |||||||||||||||||||| ||||| ||||||| |  ||  |||| | |||||||| |||||    
T  49261555 aagtgataacggaaatgcagagttagagactt---tgtatttaatcctgagtcagggacctatgtgacaacaatgtgtggaattatggactaaagtgact 49261651  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  49261652 atttgctctt 49261661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3671143 - 3671089
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||    
T  3671143 aagtgataacggaagtggagagtcatagacttatttgtatttaattctgagtcag 3671089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 19115172 - 19115268
Alignment:
Q  8 aacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    ||||||||||||||||||  ||||| ||| ||||||||||||||| | || ||||| ||||| |||| |||||| ||| | |||||| ||||||||||    
T  19115172 aacggaagtgcagagtcat-gacttctttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtcacgaactaaagtgactatttg 19115268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47075369 - 47075473
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| |||||||| |  || ||| ||||||||| ||||| | || ||||| |||||||||| |||||| ||| ||| |||| ||||     
T  47075369 aagtgataacggaagtgtagagtcaggggtttctttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtcaaggattaaagtgacc 47075468  T
Q  101 atttg 105  Q
    |||||    
T  47075469 atttg 47075473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 53959118 - 53959186
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    |||||||||||||||||||||||||   |||||||| ||||||||| |||||||| | ||||| |||||    
T  53959118 aagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacctatgtgaca 53959186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36827493 - 36827546
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtca 54  Q
    ||||||||||||||||| | | ||||||| |  |||||||||||||||||||||    
T  36827493 aagtgataacggaagtgtacattcagagattattttatatttaatcctgagtca 36827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 19331183 - 19331127
Alignment:
Q  31 ttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagg 87  Q
    |||||| |||||||||||||||||||| ||||| ||||| | || |||||| |||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagg 19331127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32665788 - 32665897
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| | ||||| ||||| |||||||||||||||||||||||| |||||    
T  32665788 aagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagtgact 32665887  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  32665888 atttgctctt 32665897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9339751 - 9339647
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||| | || |||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||  ||||    
T  9339751 aagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacctatgtaacaacgagctgcagaatcagggactaaagggact 9339652  T
Q  101 atttg 105  Q
    |||||    
T  9339651 atttg 9339647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 10333088 - 10332987
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| ||| || ||||| |||||||||| |||| | |||||||||||| ||||||||    
T  10333088 tgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctatgtgacaacgaggtgcaaagtcagggactaaagtgactatt 10332989  T
Q  104 tg 105  Q
    ||    
T  10332988 tg 10332987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7945572 - 7945676
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||| ||||| |||| |||||| |||||||| ||| ||| |    
T  7945572 aagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcagggaccaaaatgatt 7945671  T
Q  101 atttg 105  Q
    |||||    
T  7945672 atttg 7945676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10333204 - 10333308
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||| | ||| |||||||||||||||| || || | |||||    
T  10333204 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacctatgtaacagcgagctgcagaatcagagattatagtgact 10333303  T
Q  101 atttg 105  Q
    |||||    
T  10333304 atttg 10333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6612524 - 6612415
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||| | | | | | ||| |||| |||||| |||||||||||| |||||    
T  6612524 aagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacatttataacagcgaggtgcagagtcagggactaaagtgact 6612425  T
Q  101 atttgttctt 110  Q
    ||||||||||    
T  6612424 atttgttctt 6612415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52440577 - 52440645
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  52440577 aagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacctatgtgaca 52440645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5782519 - 5782410
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| ||||||||| | |||||||||| ||| ||||||||| |||||||| | ||||| ||||| |||| |||||| |||||||||||| ||||     
T  5782519 aagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaaatgaca 5782420  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  5782419 atttgctctt 5782410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 12163067 - 12163146
Alignment:
Q  249 actagttatgattaatattttaatttttaatgcaaagatttgaacagagccaaaggtaaatttggccaaatataaactac 328  Q
    ||||||||| | ||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||||||||||||||||||    
T  12163067 actagttataaataataatttaatttttattgcaaagatttgaacggagtcgagggtaaatttggccaaatataaactac 12163146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 52439580 - 52439480
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||| |||||||    |||||||| | |||||||||||||| ||| | ||||| ||||| |||||||||||||||||| ||||| |||||    
T  52439580 aagtgataacggaaatgcagag----agacttatctgtatttaatcctgagccagagacctatgtgacagcgagctgcagaatcaggggctaaagtgact 52439485  T
Q  101 atttg 105  Q
    |||||    
T  52439484 atttg 52439480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9341043 - 9341105
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctat 63  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  9341043 aagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtcagggacctat 9341105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7944257 - 7944169
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggacta 92  Q
    |||||||| |||||||||||||  ||||||||| ||||||||  |||||||||| ||||| ||||| |||| |||| ||||||||||||    
T  7944257 tgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtgacagcgagttgcaaaatcagggacta 7944169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 6614000 - 6614051
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6614000 tgataactgaagtgcagagtcagagacttatttgtatttaatcctgagtcag 6614051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 44020088 - 44020002
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggac 90  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||| | | | | |||||||||| |||| | ||||||||    
T  44020088 tgataacgtaagtgcagagtcagagacttctttatatttaatcttgagtcagagacttttgtgacaacgagttgcaaagtcagggac 44020002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22856785 - 22856732
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtca 54  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  22856785 aagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtca 22856732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 3117754 - 3117650
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| ||||||||||| || ||| ||||||||| |||||||| | ||| | ||| |||||  || ||| | |||||||||| |||||    
T  3117754 aagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcagagacctttgtgataacgatgtgaagagttagggactaaaatgact 3117655  T
Q  101 atttg 105  Q
    |||||    
T  3117654 atttg 3117650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5783127 - 5783179
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtc 53  Q
    |||||||||||||||||||||||||  ||||| ||| |||||||| |||||||    
T  5783127 aagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtc 5783179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25037983 - 25037927
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    ||||||||||| |||| ||||||||| ||||| ||| ||||||||| ||||||||||    
T  25037983 aagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcaggg 25037927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25043195 - 25043139
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    ||||||||||| |||| ||||||||| ||||| ||| ||||||||| ||||||||||    
T  25043195 aagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcaggg 25043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 50107221 - 50107275
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||||||||||||||| | |||||||||  ||| ||||||||||||| ||||    
T  50107221 aagtgataacggaagtgcacattcagagactattttgtatttaatcctgaatcag 50107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34088487 - 34088532
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatc 46  Q
    ||||||||  |||||||||||||||||||||| ||| |||||||||    
T  34088487 aagtgatagtggaagtgcagagtcagagacttctttgtatttaatc 34088532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35177500 - 35177396
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||| |||||||||| |||||    
T  35177500 aagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacctatgtgacagcgagctgcagaattagggactaaattgact 35177401  T
Q  101 atttg 105  Q
    |||||    
T  35177400 atttg 35177396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32898463 - 32898567
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| |||||  ||| |||||| |||||||||||| |||||    
T  32898463 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacctatgtgacagtgagttgcagagtcagggactaaagtgact 32898562  T
Q  101 atttg 105  Q
    |||||    
T  32898563 atttg 32898567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 1952988 - 1953090
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||| |  |||| |||||||||||||||||||||||||||||| |||||    
T  1952988 aagtgataacggaagtacagagtcatagacttatttgtatgtaatcct-agtcagagatctatatgacaacgagctgcagaatcagggactaaagtgact 1953086  T
Q  101 attt 104  Q
    ||||    
T  1953087 attt 1953090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35178822 - 35178926
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| || || ||||| |||  |||||| |||||||| ||| |||||    
T  35178822 aagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtcagggaccaaagtgact 35178921  T
Q  101 atttg 105  Q
    |||||    
T  35178922 atttg 35178926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 41754097 - 41753999
Alignment:
Q  7 taacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    ||||| ||||| |||||||| ||||| |||||||||||||||||||||||| ||||| ||||| | || ||||||| ||||||||||| ||||||||||    
T  41754097 taacgaaagtgtagagtcagggacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtgactatttg 41753999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5965460 - 5965563
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | | | |||||||||| || | |||||| |||| || |||||    
T  5965460 aagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcagggacatttgtgacaacgaggtgtaaaatcagagactgaaatgact 5965559  T
Q  101 attt 104  Q
    ||||    
T  5965560 attt 5965563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10407602 - 10407706
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||| ||| |  ||||||||| | ||||||||| |||||  | ||||| |||||  ||||||||||||||| ||||||| |||||    
T  10407602 aagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacctatgtgacagtgagctgcagaatcagagactaaagtgact 10407701  T
Q  101 atttg 105  Q
    |||||    
T  10407702 atttg 10407706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 45476267 - 45476181
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagg 87  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||| ||| || ||| ||| ||| |||| || |||||||||    
T  45476267 aagtgataacagaagtgcagagtcagagacttatttgtatttaattctgaatcatggacctttctaacagcgagatgaagaatcagg 45476181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 41754813 - 41754916
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||| |||||||||||| ||||||||  |||| ||| |||||||||||||||||| |  |||| ||||| |||| |||||||||| ||| |||| |||||    
T  41754813 aagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatctatgtgacagcgaggtgcagaatca-ggattaaagtgact 41754911  T
Q  101 atttg 105  Q
    |||||    
T  41754912 atttg 41754916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 1952045 - 1951992
Alignment:
Q  3 gtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagg 56  Q
    ||||||| | || |||||||||||| |||||||| |||||||||||||||||||    
T  1952045 gtgataatgaaaatgcagagtcagaaacttatttgtatttaatcctgagtcagg 1951992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30134671 - 30134567
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| |||||||||||||| | |||| ||| ||||||||| |||||  ||| ||| | ||||| |||| |||||| | | |||||||| ||| |    
T  30134671 aagtgataacagaagtgcagagtcacacacttctttgtatttaatcatgagtaggggacctttgtgacagcgaggtgcagagttaaggactaaagtgatt 30134572  T
Q  101 atttg 105  Q
    |||||    
T  30134571 atttg 30134567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5738041 - 5738144
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||| ||||||||   |||| ||| ||||||||| ||||||| || ||||| | |||||||  |||| | ||||| |||||| ||||     
T  5738041 aagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacctatgtcacaacgatatgcaaagtcaggaactaaagtgacc 5738140  T
Q  101 attt 104  Q
    ||||    
T  5738141 attt 5738144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41121214 - 41121160
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    |||||||||  |||||||| |||||||||||| ||| ||||||||| ||||||||    
T  41121214 aagtgataatagaagtgcatagtcagagacttctttgtatttaatcatgagtcag 41121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28619563 - 28619619
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    |||||||||  ||||||||||||||  ||| | ||| ||||||||||||||||||||    
T  28619563 aagtgataatagaagtgcagagtcaatgacctctttgtatttaatcctgagtcaggg 28619619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8074556 - 8074452
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||| ||||| ||||||||| |||||||||||||| |||||    
T  8074556 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagtgact 8074457  T
Q  101 atttg 105  Q
    |||||    
T  8074456 atttg 8074452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4592966 - 4592862
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| | ||| ||||| |||||| || |||||||||||||| |||||    
T  4592966 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacttatgtgacagcgagctacataatcagggactaaagtgact 4592867  T
Q  101 atttg 105  Q
    |||||    
T  4592866 atttg 4592862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 9538070 - 9538171
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    |||||||||||||||| | |||||||||| ||| |||||||||||||||||||| ||||| |||||||||| |||||| |||||||| ||| ||||||||    
T  9538070 tgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggaccaaagtgactatt 9538169  T
Q  104 tg 105  Q
    ||    
T  9538170 tg 9538171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 546054 - 546157
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||  ||||||| | |||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||| |||||    
T  546054 aagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctatgtgacagcgagctgcaaaatc-gggactaaagtgact 546152  T
Q  101 atttg 105  Q
    |||||    
T  546153 atttg 546157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2464774 - 2464670
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||| ||||||| || ||||| ||||| |||||||||||||||| ||||||| |||||    
T  2464774 aagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacctatatgacagcgagctgcagaatcagtgactaaagtgact 2464675  T
Q  101 atttg 105  Q
    |||||    
T  2464674 atttg 2464670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28591132 - 28591241
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| |||||||||||||||| || |||||| |||||||||||||||||||| ||||| ||||| |||| |||||| |||||||  ||| |||||    
T  28591132 aagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgact 28591231  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  28591232 atttgctctt 28591241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21069394 - 21069290
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||| ||| ||||||||||||||  ||||||||| |||||||||||||||||| | ||| | |||||||||| |||||| |||| ||||||| |||||    
T  21069394 aagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtcagagactaaagtgact 21069295  T
Q  101 atttg 105  Q
    |||||    
T  21069294 atttg 21069290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40612677 - 40612781
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||||||  |  ||| | |||||||||||||||||||| ||||  |||||  |||||||| |||||||||||||| |||||    
T  40612677 aagtgataacggaagtgcagagtcaggaaaatatctgtatttaatcctgagtcagggacctacgtgacagtgagctgcaaaatcagggactaaagtgact 40612776  T
Q  101 atttg 105  Q
    |||||    
T  40612777 atttg 40612781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 544748 - 544685
Alignment:
Q  6 ataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||||    
T  544748 ataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagacctatctgaca 544685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25590535 - 25590451
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcag 86  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||| ||||||||| ||||| ||||| |||| |||||| ||||    
T  25590535 aagtgataacagaagtgcagaatcagagacttatttgtatttaatcc-gagtcagggacctatgtgacagcgaggtgcagagtcag 25590451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2466792 - 2466896
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||| |||  | ||||| ||| | |||| |||||| |||| ||| ||| |||||    
T  2466792 aagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcagagtcagagaccaaagtgact 2466891  T
Q  101 atttg 105  Q
    |||||    
T  2466892 atttg 2466896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 18400284 - 18400192
Alignment:
Q  12 gaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactattt 104  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||| || ||||| |||||  ||| |||||| |||||||||||| |||| ||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgaccattt 18400192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32641744 - 32641819
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagct 76  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||| ||||| |||| ||||  ||||||||||||    
T  32641744 aagtgataacggaagtgcagagtcagcaacttatttgtatttaatcttgagtaagggacctacgtgacaacgagct 32641819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13483125 - 13483059
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctga 67  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||  |||||||||    
T  13483125 aagtgataacgaaagtgcagagtaagagacttctttatatttaatcatgagtcaggaacctatctga 13483059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19183055 - 19182977
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgca 79  Q
    ||||||||||||||||| ||||||||  |||||||| |||||||||||||||||| | ||||| ||||| |||| ||||    
T  19183055 aagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacctatgtgacagcgaggtgca 19182977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19186238 - 19186305
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgac 68  Q
    |||||||||||||| || |||||||||||||| ||| ||||||||||| |||||||| ||||| ||||    
T  19186238 aagtgataacggaaatgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgac 19186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16611833 - 16611760
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgag 74  Q
    ||||||||||||||||||| | |||||| ||| ||| |||||||||||||||||| | ||||| ||||| ||||    
T  16611833 aagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgacagcgag 16611760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4594118 - 4594173
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    ||||||||| |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  4594118 aagtgataatggaagtgcagagtcat-gacttatttgtatttaatcctgagtcaggg 4594173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8075851 - 8075931
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcaga 81  Q
    ||||||||||| ||||||||| ||||| |||| ||| ||||||||| ||| ||||||  |||||| ||| |||| ||||||    
T  8075851 aagtgataacgaaagtgcagaatcagatacttttttgtatttaatcttgaatcagggatctatctaacagcgaggtgcaga 8075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13483174 - 13483218
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaat 45  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||    
T  13483174 aagtgataacggaagtgcaaagtcagagacttgtttgtatttaat 13483218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14881052 - 14881017
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttattt 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  14881052 aagtgataacggaagtgcagagtcagggacttattt 14881017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18004743 - 18004696
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcct 48  Q
    ||||||||||||||||||||||||| |||| | ||| |||||||||||    
T  18004743 aagtgataacggaagtgcagagtcatagacctctttgtatttaatcct 18004696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31947055 - 31947158
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||  ||||||| |||||| ||| ||||||||  | ||| |||   |||| ||||||| |  ||||||||||| ||||||| |||||    
T  31947055 aagtgataacggaagtctagagtcatagacttgtttgtatttaattttaagtaaggaatctatatgacaacaaagtgcagaatcagagactaaagtgact 31947154  T
Q  101 attt 104  Q
    ||||    
T  31947155 attt 31947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 26327123 - 26327193
Alignment:
Q  34 tttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactattt 104  Q
    ||||||||||||||||||||||| |||  | |||||||||| |||||| |||| ||| ||| | |||||||    
T  26327123 tttatatttaatcctgagtcaggagcccttatgacaacgaggtgcagagtcagtgaccaaaataactattt 26327193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32640393 - 32640325
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    |||||||||| |||||  ||||| || ||||||||| ||||||||||||||| | || ||||| |||||    
T  32640393 aagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcctatgtgaca 32640325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43457562 - 43457459
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||  |||| |||||||||||||||||||||||| |||||    
T  43457562 aagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagtgact 43457463  T
Q  101 attt 104  Q
    ||||    
T  43457462 attt 43457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44334467 - 44334571
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||    
T  44334467 aagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgcagaatcaggaactaaagtgact 44334566  T
Q  101 atttg 105  Q
    |||||    
T  44334567 atttg 44334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 44333243 - 44333140
Alignment:
Q  2 agtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgacta 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||| |||||| |||||||| ||| ||||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagtgacta 44333144  T
Q  102 tttg 105  Q
    ||||    
T  44333143 tttg 44333140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46286608 - 46286501
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||| |||| || ||| |||||||||||| |||||    
T  46286608 aagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtcagggacctttctaacagcgagatgaagagtcagggactaaagtgact 46286509  T
Q  101 atttgttc 108  Q
    ||||||||    
T  46286508 atttgttc 46286501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7258380 - 7258276
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||| || ||| |||||||| ||| |||||    
T  7258380 aagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtcagggaccaaagtgact 7258281  T
Q  101 atttg 105  Q
    |||||    
T  7258280 atttg 7258276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35727804 - 35727716
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcaggga 89  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  35727804 aagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcaggga 35727716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48777361 - 48777257
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| || |||||| ||||||||| |||||||||| | ||| ||||| |||||||||||||||| ||||||| |||||    
T  48777361 aagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagagactaaagtgact 48777262  T
Q  101 atttg 105  Q
    |||||    
T  48777261 atttg 48777257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30925026 - 30925132
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||| ||||   |||||||||||||||||| |||| |||||    
T  30925026 aagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggacctatgtgactgggagctgcagaatcagggattaaagtgact 30925125  T
Q  101 atttgtt 107  Q
    |||||||    
T  30925126 atttgtt 30925132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48647461 - 48647565
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||  ||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||| | ||||||| |||||||||| ||||| |||||    
T  48647461 aagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctatgtgatagcgagctgtagaatcagggtctaaagtgact 48647560  T
Q  101 atttg 105  Q
    |||||    
T  48647561 atttg 48647565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48646154 - 48646051
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |||| |||| | |||||||| ||| |||||    
T  48646154 aagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtgact 48646055  T
Q  101 attt 104  Q
    ||||    
T  48646054 attt 48646051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 35729105 - 35729213
Alignment:
Q  2 agtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgacta 101  Q
    ||||||| ||||||||||||||||| ||||||||| ||| ||||||| ||||| || ||||| ||||| ||||||||| ||||||||| |||| ||||||    
T  35729105 agtgatagcggaagtgcagagtcagtgacttatttgtatgtaatcctaagtcaaggacctatgtgacagcgagctgcaaaatcagggaataaagtgacta 35729204  T
Q  102 tttgttctt 110  Q
    |||| ||||    
T  35729205 tttgctctt 35729213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 45583789 - 45583685
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||| ||||  |||||| | |||||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||||| |||||    
T  45583789 aagtgataacggaagtgcagaatcaggaacttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtgact 45583690  T
Q  101 atttg 105  Q
    |||||    
T  45583689 atttg 45583685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48788690 - 48788794
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| |||| |||| | ||| |||  ||| |||||    
T  48788690 aagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaaggatcaaagtgact 48788789  T
Q  101 atttg 105  Q
    |||||    
T  48788790 atttg 48788794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10899091 - 10899180
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggac 90  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||  |||| ||||| |||| |||||| ||||||||    
T  10899091 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatctatgtgacagcgaggtgcagagtcagggac 10899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44530629 - 44530681
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtc 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44530629 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtc 44530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 42477482 - 42477382
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatt 103  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||  ||||||||| |||||| ||| |||| ||| ||| ||||    
T  42477482 tgataacggaagtgcagagtcag-gacttatttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtcaaggaccaaattgattatt 42477384  T
Q  104 tg 105  Q
    ||    
T  42477383 tg 42477382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7259702 - 7259805
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||| | || || ||||| |||||| || |||||| || |||| |||||    
T  7259702 aagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgaatcagagacccatgtgacagcgagctacaaaatcagcgattaaagtgact 7259801  T
Q  101 attt 104  Q
    ||||    
T  7259802 attt 7259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12223717 - 12223820
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||  ||  |||||  |||||||||||| ||||     
T  12223717 aagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacctatgtgacattgatgtgcagtgtcagggactaaagtgacc 12223816  T
Q  101 attt 104  Q
    ||||    
T  12223817 attt 12223820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 34705009 - 34704906
Alignment:
Q  6 ataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    |||||| |||| || |||||||||||| ||| |||||||||||||||||| ||||| | |||||||||| |||||| || | ||||||| |||||||||     
T  34705009 ataacgaaagtacacagtcagagacttctttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtgactattta 34704910  T
Q  106 ttct 109  Q
    ||||    
T  34704909 ttct 34704906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8375019 - 8374926
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaa 94  Q
    ||||||||||||||||||| | ||||| |||| ||| |||||||| ||||||||| | ||||| ||||| |||| |||||| ||||||||||||    
T  8375019 aagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 8374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13578338 - 13578392
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  13578338 aagtgataacggaagtgcagagtcagtgacttatttgtatttaattctgagtcag 13578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 8375604 - 8375669
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| |||||||||| ||||| |||||    
T  8375604 tgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgaca 8375669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8048802 - 8048906
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||| | ||| | || || |||| |||||| |||| |  |||| |||||    
T  8048802 aagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacctttgtgtcagcgaggtgcagagtcagagggtaaagtgact 8048901  T
Q  101 atttg 105  Q
    |||||    
T  8048902 atttg 8048906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 10894449 - 10894393
Alignment:
Q  7 taacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctat 63  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||    
T  10894449 taacggaagtgcagaattagagacttatttatatttaatcttgagtcagggacctat 10894393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45584514 - 45584566
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtc 53  Q
    |||||||||||||||||||||||||  | ||||||| ||||||||||||||||    
T  45584514 aagtgataacggaagtgcagagtcattggcttatttgtatttaatcctgagtc 45584566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12220128 - 12220073
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagg 56  Q
    |||||||| | ||||||||||||||||||||| ||| ||||||||| |||||||||    
T  12220128 aagtgatatcagaagtgcagagtcagagacttctttctatttaatcttgagtcagg 12220073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 33607644 - 33607695
Alignment:
Q  4 tgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||| ||||    
T  33607644 tgataacggaagtgcagaatcagagacttctttgtatttaatcctgaatcag 33607695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19433952 - 19434056
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| ||||||| ||||| | |||||  |||||||||||||| | |||| | ||| | |||||||||| || ||| | |||||||||| ||||     
T  19433952 aagtgataactgaagtgcggagtcggtgacttccttatatttaatcctaaatcagagacctttgtgacaacgagatggagagttagggactaaagtgaca 19434051  T
Q  101 atttg 105  Q
    |||||    
T  19434052 atttg 19434056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44529133 - 44529077
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    |||||||||| ||||||  ||||| ||||||||||| ||||||||| ||||||||||    
T  44529133 aagtgataacagaagtgttgagtcggagacttatttgtatttaatcatgagtcaggg 44529077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7509489 - 7509534
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatc 46  Q
    |||| |||||||||||||||| || ||||||| |||||||||||||    
T  7509489 aagtaataacggaagtgcagaatctgagacttctttatatttaatc 7509534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39708208 - 39708107
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||| |||| | ||||| ||| |||| |||| ||||||| || ||| | ||||  |||| | |||| |||| ||||||| |||||    
T  39708208 aagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaagtgact 39708109  T
Q  101 at 102  Q
    ||    
T  39708108 at 39708107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 116160 - 116056
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| ||| |||||| |||||    
T  116160 aagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaactaaagtgact 116061  T
Q  101 atttg 105  Q
    |||||    
T  116060 atttg 116056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30748104 - 30748000
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||||| ||||| ||||| |||| ||||||||||||||||||| |||||    
T  30748104 aagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaagtgact 30748005  T
Q  101 atttg 105  Q
    |||||    
T  30748004 atttg 30748000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31219060 - 31218956
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||||||  |||| ||| ||||||||||||||| | || ||||| ||||| |||| |||||| |||| || |||| ||||     
T  31219060 aagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagtcagagattaaagtgacc 31218961  T
Q  101 atttg 105  Q
    |||||    
T  31218960 atttg 31218956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31219178 - 31219281
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||  |||||||  |||| ||| ||||||||||||||| |  | ||||| ||||| |||| |||||| ||||||| |||| ||||     
T  31219178 aagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagtcagggattaaagtgacc 31219277  T
Q  101 attt 104  Q
    ||||    
T  31219278 attt 31219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42278154 - 42278050
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||| ||||| ||||| | ||||||||||||| |||||||| |||||    
T  42278154 aagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacctatgtgacagcaagctgcagaatcaaggactaaagtgact 42278055  T
Q  101 atttg 105  Q
    |||||    
T  42278054 atttg 42278050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47874669 - 47874566
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||| ||||| ||| | |||||||||||||||| ||||||| |||||    
T  47874669 aagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaagtgact 47874570  T
Q  101 attt 104  Q
    ||||    
T  47874569 attt 47874566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 53771067 - 53771171
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||||||||||||||||||| | ||| ||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||||||||||| ||||     
T  53771067 aagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaagtgacc 53771166  T
Q  101 atttg 105  Q
    |||||    
T  53771167 atttg 53771171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47878502 - 47878606
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||| ||||| | ||| |||| |||||| |||||||  ||| |||||    
T  47878502 aagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcagggatcaaagtgact 47878601  T
Q  101 atttg 105  Q
    |||||    
T  47878602 atttg 47878606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31844827 - 31844718
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||| ||||||| ||||| || ||||| ||| |||||||||||||||||||| ||||| ||||| |||| ||||||   |||||||||| |||||    
T  31844827 aagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagctagggactaaagtgact 31844728  T
Q  101 atttgttctt 110  Q
    ||||| ||||    
T  31844727 atttgctctt 31844718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26172960 - 26173028
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgaca 69  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||| |||||||    
T  26172960 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggacctttctgaca 26173028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 54574530 - 54574417
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||||||||| |   |||||||| |||||||||||||||||| | ||||| ||||| |||| |||||| | ||| |  ||| |||||    
T  54574530 aagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgcagagtgaggaagcaaaatgact 54574431  T
Q  101 atttgttcttatat 114  Q
    ||||| ||||||||    
T  54574430 atttgctcttatat 54574417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 53770437 - 53770335
Alignment:
Q  2 agtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgacta 101  Q
    |||||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||  ||||| |||   |||| |||||| |||| ||||||| |||| |    
T  53770437 agtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtgaatgcgaggtgcagagtcagagactaaagtgacca 53770338  T
Q  102 ttt 104  Q
    |||    
T  53770337 ttt 53770335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54574823 - 54574876
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtca 54  Q
    |||||||||| |||||||||||| ||||| |||||| |||||||||||||||||    
T  54574823 aagtgataacagaagtgcagagttagagatttatttgtatttaatcctgagtca 54574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4703235 - 4703339
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    ||||||||||||||||| | ||||| |||||| ||| |||||||| |||||| |||| ||||| ||||| |||| || ||| ||||  |||||| ||||     
T  4703235 aagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacctatgtgacagcgagatgtagagtcagtaactaaagtgaca 4703334  T
Q  101 atttg 105  Q
    |||||    
T  4703335 atttg 4703339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 19051253 - 19051353
Alignment:
Q  5 gataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactattt 104  Q
    ||||||| ||||| |||||||||||||| ||| |||||||||  ||||||| | ||| | || ||||||| || ||| |||||||||||| |||| ||||    
T  19051253 gataacgaaagtgtagagtcagagacttctttgtatttaatctcgagtcagtgacctttgtgccaacgaggtgtagagtcagggactaaagtgaccattt 19051352  T
Q  105 g 105  Q
    |    
T  19051353 g 19051353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 50694850 - 50694798
Alignment:
Q  5 gataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    ||||||||||||||||| ||||| |||||||||||||||||  ||||||||||    
T  50694850 gataacggaagtgcagaatcagaaacttatttatatttaattttgagtcaggg 50694798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19050343 - 19050298
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatc 46  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||    
T  19050343 aagtgataacggaagtgcagagtccgagacttctttgtatttaatc 19050298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 44158591 - 44158505
Alignment:
Q  19 agagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgactatttg 105  Q
    |||||||| ||||| ||| |||||||||||||||||||  ||| | | |||||||| |||||| || ||| ||||| |||| |||||    
T  44158591 agagtcagggacttctttgtatttaatcctgagtcaggaacctctgtaacaacgaggtgcagagtcgggggctaaattgaccatttg 44158505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39869025 - 39868934
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaa 94  Q
    |||||||||||||||||||||||| || |||| ||| ||||||||  |||||||||| ||| | | ||| |||| |||||| |||| |||||||    
T  39869025 aagtgataacggaagtgcagagtc-ga-acttgtttgtatttaattatgagtcagggacctttgtaacagcgaggtgcagagtcagagactaaa 39868934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6039215 - 6039171
Alignment:
Q  12 gaagtgcagagtcagagacttatttatatttaatcctgagtcagg 56  Q
    |||||||| || ||||||||||||||||||||||  |||||||||    
T  6039215 gaagtgcatagccagagacttatttatatttaattttgagtcagg 6039171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21621928 - 21621872
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggg 57  Q
    ||||||||||||||||||| | |||  ||||  ||| ||||||||||||||||||||    
T  21621928 aagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcaggg 21621872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48740038 - 48740142
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||||| ||||||||||||  | ||||| ||| ||||||||  ||||||||||  |||  |||||| ||| ||||||  || |||||||| ||||     
T  48740038 aagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgacaatgaggtgcagagacatggactaaagtgacc 48740137  T
Q  101 atttg 105  Q
    |||||    
T  48740138 atttg 48740142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 74331 - 74433
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaggggcctatctgacaacgagctgcagaatcagggactaaactgact 100  Q
    |||||||| | || ||| |||||||  ||||| ||| ||||||||| ||||| |||| ||||| |||||  ||| |||||| ||||||||||||||||||    
T  74331 aagtgatatcagaggtgtagagtcaaggacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaactgact 74430  T
Q  101 att 103  Q
    |||    
T  74431 att 74433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5704 - 5650
Alignment:
Q  1 aagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcag 55  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| |||||||||    
T  5704 aagtgataacggaagtgtagagtcagggacttctttgtatttaattctgagtcag 5650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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